Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g01363 ATGGCCGCGCAGTCGTCACCCTCCACCGCGGGGTCCCCCAACTTTATGCTCGCGATCAACGAGAAGAAGACGAACACAGTTGATATGTATCGCCCTATTCGCAATTACGTTGCATGTCATTACTCCGAGTGTCAAGCGCAGAACCTTGACGATGACCTCCAAATCCTGAAGCAACTTCGCTCCGACCTCGAGCGTCACACCGATCCGTCCCTCCCGGCGCGCCGGGATCTTCTCCAAACCTACTTCAAATCTCTCTGCCTTGTTCAGACGCGCTTCCCAATCTCCCCTGACCGTCACCACGTCAACGCTCTCACCTTCGTTTGGTTCGATGCCTTCAAGCCCAAGCAGAAAGCCTCACAGCAGAACATCCACCTCGAGAAGGCCTCCGTGCTTTTCAATTTGGGCGCCGTTTATAGTCAGATTGGAATGTCTTTCGATCGATCCACCGTTGACGGCCGCCGCCTGGCCTCTCATGCCTTCATTGCTGCTGCCGGTTCCTTTGCCTTCCTCCGCGACAACGCCTCCATGGAGGCCTCCGTTGGGAATTCCACCACCGTTGATTTGTCCGTTGAGTGTGCCGGGATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAGGAGTGCGTCTTCGAGAATACCATTGCTAGAGGGAGCACTCCCGGTGTCTGTGCCAAGATCTCCGGACAGGTTGGGCTTTATTTTGAGGGAGTTTTAGCTGCACTGAATGTTGCACCTTTGAGCCAGCACTTTGATAAGTCCTGGATAGCTCATGTACAGTTGAAGGCAGCACTGTTCTATGCAGAAGCTTGTTATAGGAATGCATTGGAACTGCATGATAAAGAGGAGATAGCAGAGGAGATTGCACGGCTGCGGAGTGCTGTTAATTTGTTGACTGAGACGAAGAAGAGCTCTAAGGGTGCTGCAGCGCAAATTCTAGATGCCATTGCCAGGTTAGAGATTAATATTAAACGGAACCTTGAAAGGGCTGTCAAGGAGAATGATAGCGTTTATCTCATGTGTGTTCCTTCACCAAGATCGTTACCACCTCTTCCAGTATTTTCTATGGTGAAGCCCTTGGCAATGAATGAGGTGCTGGATGCAAGCAAGGAGAAGATGTTTGCGGGTTTTATTCCAAACAGCAGTGCACAGGTCGCTTACGGGTATACTGAATTTGTAGATGATATTGTAAGCAGACAGACTGAAAGCTTGTGGCAAGCTAGGGAGCTAACCCGAGTGAGCCTTAAGGAAATGTTATTGCCAGATTCCATTCTGGCTTTGGAAGGAAATTTTACTCTTCCAACAAGTCTCAAAGAAGACGTGGAGGCTGTGCAGATCAGTGGGGGTCCTGCTGGTTTGGAAGCAAAGTTGCTGCAACTTGAGGACCTAAGGAGGGTGAATCAAGAGTTGCTGGTCCAGACTGAGGAAATGTTGCAGAAGGAAGCAAGAGAAGATTCTCAATTTCGAAATCAATTTGGCACAAAATGGACCAGGCCCCAGTCAAGCACCTTGACCAAAAACTTGCAGGATAGGCTCAACAGATTTGCAGGTAACTTGAAGCAAGCTGCTGAAAGTGATGGTAGAATTGAGTGTTCAGTTAGAGAACATTCAGCGCTCATGTCAATCCTTGATGCCCGTCCGATTGAATCTGCACTTCCGAGCTTGGCACGGCCAATTATGTCTTTTAATCAAAATGAAGATGCTATTGTGGGGTCTCTCAAGCAAAGCTTGAGGCAACTAGAAACTCTTGGAGGTCAAAGGGCTGGTCTTGAAGATATGCTTGAGGAGATGCAAAGAAAGGATGATATATTACCAAAGTTAATGAAATCCAGCTGTTCTTATGATCTCTTGAAGAAGGAGATAGCAAAATATGACCATATTTGTGAAGAAATAGCTCAAAATATCAAGGCAGAAGGGCAATTGTTGCTGCAGATCCAGGATCAGAATGAAGAGTTCTCTGTTATCTTCAATCTTGATGATTACAAAGCTTCACGTGAAAAAGCCTATAAGCAGATTGAAGCTTCCATCGCAAAATTTCAAGAAATAGAGGACAACATCAATGAAGGGTTAAAATTTTATGTTACCCTACAGGATGCAATCACTAACGTAAAGCAGCAGAGCTTCGACTTTATAATGACAAGGAACATCCAGTGCAAAGAAATGATTGAAGACGTTCAGAGACAAGTGGCAGGTCTGAGTTTCCAGGATAACAGAAACATAGGTGCTATTAACAGCAACTACCCATCAGTGGGAAGCCAAAATCAAAGAGCCAGTACACAAACAGATTCTCGTCCACAAACACCTTATTATCAACCAGATGAGCAGCCACCAGTTGCTCCCTGTAGCAATGATCCCCCTTTCGAATACCGTGGTCCTGCACATCATCAGCCTCCACCTCCACCTCCACCACGATACCACATTCCACCATCATCAACTGCTCCATACTCATCCCGTCAGGGCCACCAGCAGCCACCGGCAAACCATGAGTATGCCCAACCAGCATATCCCGGATGGCGTGGTCCGTACTACAACACACAAGCATAA 2538 0.4764 MAAQSSPSTAGSPNFMLAINEKKTNTVDMYRPIRNYVACHYSECQAQNLDDDLQILKQLRSDLERHTDPSLPARRDLLQTYFKSLCLVQTRFPISPDRHHVNALTFVWFDAFKPKQKASQQNIHLEKASVLFNLGAVYSQIGMSFDRSTVDGRRLASHAFIAAAGSFAFLRDNASMEASVGNSTTVDLSVECAGMLEKLMLAQAQECVFENTIARGSTPGVCAKISGQVGLYFEGVLAALNVAPLSQHFDKSWIAHVQLKAALFYAEACYRNALELHDKEEIAEEIARLRSAVNLLTETKKSSKGAAAQILDAIARLEINIKRNLERAVKENDSVYLMCVPSPRSLPPLPVFSMVKPLAMNEVLDASKEKMFAGFIPNSSAQVAYGYTEFVDDIVSRQTESLWQARELTRVSLKEMLLPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAKLLQLEDLRRVNQELLVQTEEMLQKEAREDSQFRNQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIECSVREHSALMSILDARPIESALPSLARPIMSFNQNEDAIVGSLKQSLRQLETLGGQRAGLEDMLEEMQRKDDILPKLMKSSCSYDLLKKEIAKYDHICEEIAQNIKAEGQLLLQIQDQNEEFSVIFNLDDYKASREKAYKQIEASIAKFQEIEDNINEGLKFYVTLQDAITNVKQQSFDFIMTRNIQCKEMIEDVQRQVAGLSFQDNRNIGAINSNYPSVGSQNQRASTQTDSRPQTPYYQPDEQPPVAPCSNDPPFEYRGPAHHQPPPPPPPRYHIPPSSTAPYSSRQGHQQPPANHEYAQPAYPGWRGPYYNTQA 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g01363 845 SMART BRO1_2 15 399 IPR004328 -
Spst10g01363 845 ProSiteProfiles BRO1 domain profile. 15 416 IPR004328 -
Spst10g01363 845 MobiDBLite consensus disorder prediction 741 767 - -
Spst10g01363 845 CDD BRO1_Alix_like_1 16 371 - -
Spst10g01363 845 MobiDBLite consensus disorder prediction 789 807 - -
Spst10g01363 845 Coils Coil 279 299 - -
Spst10g01363 845 Gene3D alix/aip1 in complex with the ypdl late domain 377 654 - -
Spst10g01363 845 Gene3D alix/aip1 like domains 423 703 - -
Spst10g01363 845 Pfam BRO1-like domain 16 394 IPR004328 -
Spst10g01363 845 MobiDBLite consensus disorder prediction 741 845 - -
Spst10g01363 845 Pfam ALIX V-shaped domain binding to HIV 431 714 IPR025304 GO:0005515
Spst10g01363 845 Gene3D alix/aip1 like domains 13 376 IPR038499 -
Spst10g01363 845 PANTHER PCD6 INTERACTING PROTEIN-RELATED 13 834 - -
Spst10g01363 845 Coils Coil 578 598 - -
Spst10g01363 845 MobiDBLite consensus disorder prediction 808 824 - -
Spst10g01363 845 Coils Coil 451 478 - -
Spst10g01363 845 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g01363 Spst-Chr10 14090896 14098524 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g01363 10 14090896 14098524 Spst10g01363 10 14090896 14098524 ECH