Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00891 ATGGGTTTCAAAAGGCAAGCACTATCCCTGGTTCTCTTGTCCCTCTTGACATTCTCTTGGGCCAAAAAATCTCCACAGGAGGTTACTGGTGGGAAAATTGCCATCTACTGGGGCCAAAACAAAGATGAAGGAACCTTGACTGCCACATGTGACACTGGAAACTACGACATTGTCCTCCTATCCTTCTTGAACAAGTTCGGTTGTCGCAGAACCCCATCAGGGAACTTCGATTGCCATTGTGGTAATGACTGGAGCACTTGTGAAGAACTAGCCCCCGAAATAAAGCACTGCCAGGAGAAAGGTGTGAAAGTGTTCCTTTCACTTGGAGGACCTTCAGGGGATTACTCCCTCTGCTCATCCTCGGATGCAGTAGTGGTTGCCAACTACCTCTATGGTAACTTCCTCAGCGGTGAATCTGGTCCACTAGGAAAAGTAACCTTGGATGGCATTGATTTTGACATTCAAAAAGGCTCAAACCTTTATTGGGATTGCCTTGCCAAGGAACTACAGTCTTTCAAAGACCAAAACCAGAACTTTTACTTGTCTGCAGCCCCACGATGTTTTATCCCAGATTACCACCTTAACCAAGCTATCAAAAAAGGGTATTTCGATTACATATTTGTTAAGTTCTACAATAGCCCTTCATGCCAATATACATCTGGTGGCATTACTACTTTCCTTTTATCTTCATGGAATGCGTGGACCAGTTTTGTTCCATCTAATAGCTTGGTATTCTTGGGATTACCAGCAGCACCGGCCGTAGCTCCTCTCGGTGGTTATGTAGCACCACAAGTTGTTACTTCTGATATACTTCCCTACATCATGAATTCTTCCAACTATGGAGGAATTGTGATATGGGACAGATCCCTTGATAATCAAACTCAATTCACCCAAAAAATCAAGGATCAAGCTAAGAAAATGGTGGTTTTGCCCTCTGGAAAAGCAATTTATTAG 954 0.4361 MGFKRQALSLVLLSLLTFSWAKKSPQEVTGGKIAIYWGQNKDEGTLTATCDTGNYDIVLLSFLNKFGCRRTPSGNFDCHCGNDWSTCEELAPEIKHCQEKGVKVFLSLGGPSGDYSLCSSSDAVVVANYLYGNFLSGESGPLGKVTLDGIDFDIQKGSNLYWDCLAKELQSFKDQNQNFYLSAAPRCFIPDYHLNQAIKKGYFDYIFVKFYNSPSCQYTSGGITTFLLSSWNAWTSFVPSNSLVFLGLPAAPAVAPLGGYVAPQVVTSDILPYIMNSSNYGGIVIWDRSLDNQTQFTQKIKDQAKKMVVLPSGKAIY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00891 317 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 31 307 IPR001223 GO:0005975
Spst10g00891 317 SUPERFAMILY (Trans)glycosidases 29 297 IPR017853 -
Spst10g00891 317 CDD GH18_hevamine_XipI_class_III 31 302 IPR045321 -
Spst10g00891 317 PANTHER ENDOCHITINASE 12 301 - -
Spst10g00891 317 Pfam Glycosyl hydrolases family 18 33 290 IPR001223 GO:0005975
Spst10g00891 317 Gene3D Glycosidases 31 304 - -
Spst10g00891 317 FunFam Acidic endochitinase SE2 31 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00891 Spst-Chr10 9666066 9667019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00891 11 300 Glycoside Hydrolase AT5G24090 44.521 2.39e-84 254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g00516 11 26977147 26978167 Spst10g00891 10 9666066 9667019 ECH
Spst10g00891 10 9666066 9667019 Spst10g00891 10 9666066 9667019 ECH
Spst4g03308 4 72941639 72943084 Spst10g00891 10 9666066 9667019 PCT