Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00616 ATGGTCTTGGGGAAGCAGAAAGGGTGGCGTGGACATAGGAAGAGTATAGAAGAACGTGGGGGGCTTGACCGAGAGGGTGTTGGTGCGCAGAAGGCTGCAAGATTAGAACGAAAAAAACAAAGAAAGAAACCGAAAAGAGACCAACAAAGCACGAAGGAAAAGGAAAGTTTTGTTGAATGTAAAAGAATGGTTACATTGCCCCGCACAAAGGAAGCAGCAGCAGCAGCAGCACCTATAGACCCTAGGGAAATGATACAGGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCCTATCAAGAGCAGCTTCTCCTTCAGCAGCAGATGCAGCAACAAAACAATGATATCTTTGGTGGAGGCGGAGGAAGAGGAGGATTGAACATGTACCCTGCTGAAGTCTCTCCAATCATGCATAATCAGCCTTGGTCTATGCCTCATCATCAGGTTCATCACCCCTTCAACCCGGTGAGAGAGCATGACCCTTTTCTCGTCCCTCCCCAACCTTCACCCTATGCAAGTTTGTTCAACCGAAGGGGTCATTCTCTTCAGTTTGCATATGATGGTTCATCTTCTGACCACCTTAGGATCATATCTGATACCCTTGGACCGGTCGTTCAACCCGGTTCAGCACCCTTCGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAAGAAATCATGGAGGCTAAGGCCCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAGCTGCGAAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCATTGATAGCAGAATCGAGTCCGGTTCCTACGGAGGCCGATGAGTTAACAGTGGTGGACGAAGCTGATGAAGATGGCAAGTCTGTGATCAAAGCCTCTTTGTGCTGTGAAGATAGGTCAGATCTGTTCCCTGAACTAATCAAGACCTTGAAAGCATTGAGGCTAAGAACCCTTAAAGCTGAGATCACTACGCTAGGAGGGCGTGTGAAGAACGTGCTGTTCATCACTGGGGAAGAAGCAGACTCAAGCAGTGGCAGCGAGGACCATAACCACCAGCAACAGTACTGCATTAACTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGCGTAGGAGATGAGTCTGCTTCTGCAAATATTAAGAGACAAAGGACCAATATAATATCAATGTCCTAG 1272 0.4748 MVLGKQKGWRGHRKSIEERGGLDREGVGAQKAARLERKKQRKKPKRDQQSTKEKESFVECKRMVTLPRTKEAAAAAAPIDPREMIQEDQGQCSSQAINNYHQAYQEQLLLQQQMQQQNNDIFGGGGGRGGLNMYPAEVSPIMHNQPWSMPHHQVHHPFNPVREHDPFLVPPQPSPYASLFNRRGHSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGKSVIKASLCCEDRSDLFPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEADSSSGSEDHNHQQQYCINSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00616 423 Gene3D - 233 294 IPR036638 GO:0046983
Spst10g00616 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 287 IPR011598 GO:0046983
Spst10g00616 423 MobiDBLite consensus disorder prediction 1 58 - -
Spst10g00616 423 MobiDBLite consensus disorder prediction 10 34 - -
Spst10g00616 423 SMART finulus 244 293 IPR011598 GO:0046983
Spst10g00616 423 FunFam transcription factor bHLH30 233 296 - -
Spst10g00616 423 CDD bHLH_AtAIG1_like 233 309 - -
Spst10g00616 423 PANTHER TRANSCRIPTION FACTOR BHLH30 115 419 IPR045847 GO:0003700|GO:0006355
Spst10g00616 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 294 IPR036638 GO:0046983
Spst10g00616 423 Pfam Helix-loop-helix DNA-binding domain 241 287 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00616 Spst-Chr10 6218995 6223146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00616 93 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.507 7.17e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst10g00616 HLH 2.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00616 10 6218995 6223146 Spst10g00616 10 6218995 6223146 ECH