Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00615 ATGCTGGTTCGGAGGAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTGCAAGCCCTGGTAGCTCATGCTTTGCTTTTCTCTTTCACTCTTCTCCTTGCTCTCAAGCTTGACCATCTCCTTCCTTATTCATGGACATGGTGGAAAGTATTTTCTCCTCTATGGCTTTTTCATGCTGTGGTGGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCGATTCCTCATGATCGCCGATGGGCTCCTTTTCATTCACTCGTAGCAACTCCACTACTCGTTGCATTTGAGCTACTTCTTTGTATACATCTCGGGAGCAGTTATGTGATGAATTTAAGGATTGTCTTCATGCCCCTGGTATTTTTCGAAATGGTGGTTTTGTTTGATAACATCAGGATGTGTAGGGCGTTGATGCCTGGGGATGATGAAAATTTGACCGATGAAGCAGTATGGGAAACTCTTCCTCACTTCTGGATTTCAATATCAATGGTCTTCTTGATTGCTGCCACAGTGTTCACCCTTCTAAAAATATGTGGTGATGTTGCTGCCCTAGGCTGGTGGGACTTATTTATTAACTATGGGATTGCACAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGCACAATCCAACTATTCATGGAGGCTGTCACGTCACAGAACCATGTTCATCATCAAATACCATAAGATACTTAGACATGAGTAGAGGAGGCTTAGTTATTTATACAGATGAAGATAGGCAGCAAAATGGGTTCTGCAATCTGCAGGATATTGGCGGGCATATAATGAAAATTCCATTCATTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACACCATCCAGTGCAAATAATCTGCAACATTGGATCATTTTTTCACCACTTTTTCTGTTGCAAGGAGCTGGGGTTTTATTTGCAGCATATAGATTAATAGAGAAGATAGTTATTTTAGTCTACAGTGGAGATATTCCTGAAAGATACTCTGCTATAGCATCAAAATCTCGTGAGTGTTTTGGGTTCTTTCGACGTGGGTCAAGGTTACTTGGTTGGTGGTCAATAGATGAAGGAAGTAAAGAGGAAGAAGCTAGACTTTTTTGTTCTGGGAATTCTGGGTATAATACTTTTACCCCTGAAACAGTGAAGAAAATGCCTAGATCAGATCTGGTTGAGGAGATTTGGAGACTACAAGCTGCACTGGGTGAGCAGACAGAGGTTACAAAATTTAGCCAGGAGGAGTATGAAAGACTTCAAAATGAGAAGATCTTATGTAGAATTTGCTTCGAGGAGCAGATTAATGTGGTCCTCCTTCCCTGCAGGCATCACATAATTTGCAACACTTGCTGCGAAAAATGTAAAAGGTGCCCTGTCTGCCGTGGCACCATTGAAGAAAGGATGCCTGTATATGATGTGTAG 1410 0.4234 MLVRRRVMSWRRVAKALQALVAHALLFSFTLLLALKLDHLLPYSWTWWKVFSPLWLFHAVVARGRFSLPAPSIPHDRRWAPFHSLVATPLLVAFELLLCIHLGSSYVMNLRIVFMPLVFFEMVVLFDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFLIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGGCHVTEPCSSSNTIRYLDMSRGGLVIYTDEDRQQNGFCNLQDIGGHIMKIPFIGFQILLFMHLEGTPSSANNLQHWIIFSPLFLLQGAGVLFAAYRLIEKIVILVYSGDIPERYSAIASKSRECFGFFRRGSRLLGWWSIDEGSKEEEARLFCSGNSGYNTFTPETVKKMPRSDLVEEIWRLQAALGEQTEVTKFSQEEYERLQNEKILCRICFEEQINVVLLPCRHHIICNTCCEKCKRCPVCRGTIEERMPVYDV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00615 469 Pfam Transmembrane Fragile-X-F protein 35 297 IPR019396 -
Spst10g00615 469 ProSiteProfiles Zinc finger RING-type profile. 422 457 IPR001841 -
Spst10g00615 469 SUPERFAMILY RING/U-box 413 464 - -
Spst10g00615 469 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 469 - -
Spst10g00615 469 Pfam Zinc finger, C3HC4 type (RING finger) 420 462 - -
Spst10g00615 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 468 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00615 Spst-Chr10 6207160 6214141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00615 8 469 C3H Transcription Factor Family AT1G73950 61.702 0.0 587
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00615 10 6207160 6214141 Spst10g00615 10 6207160 6214141 ECH