Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00607 ATGGATACAGGCAGTTCCACAGATGAAACCACCACCACCATCGACTCTCTTTCCCTTCCGCCCAATATATCTCCGCCGCCTCTTAGCCGCGCCGGAAGCGGCATCGTGGACCCCGACGGTGTTTCCGGAGAGGCCGAATCCCGCAAACTTCCATCCTCCAAATACAAAGGCGTGGTGCCGCAACCCAACGGTCGTTGGGGCGCTCAGATTTACGAGAAGCATCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGCCGCGACGCCGTCACGAACTTCAAGCCTCTAGCCGGGGCAGGCGACGACGCCGAGACCGAGTTTCTCAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTTCGCAAGCACACCTACGACGACGAGCTCCAGCAGAGCACTCGCGGTGGCAGGCGCCGCGGCAACGCAGAGGCCGCGTCGCGGTGCGACGAGATGGCGCGTGAGCAGCTGTTCGAGAAAACGGTGACGCCAAGCGACGTTGGGAAGTTGAATCGATTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTCCCCTTGAGCGGTGGATCCGGTAGCGGAGTGTCGCCGTGCGCTGTGGCGGCGGCGAAGGGAGTGCTGTTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTAACCAAAGGATGGAGCCGGTTCGTGAAGGAGAAGAATTTGAGAGCTGGCGACGCGGTTCGGTTTTTCAAGTCAACCGGACCGGACCCGCAGCTTTATATAGACTGCAAGGCCAGGGGTAGTGGCGGTATTTGTGAGGTTAATAGTAACAATAATGGTGGGAGTTTGTTTCTTCCGGTGGGACCGGTTGACGAGCCGGTTCATATGGTTCGGCTTTTCGGGGTGAACCTTTTGAAACTACCCGGTTCGGATGGTGGTGTCGGGGTTGGTTATGAGCGGAAGCGGAAAGAGATGGAACTGTTTGCATTCGAATGCAGTAAGAAGTTTAAAGTAATTGGAGCTTTGTAA 1083 0.5725 MDTGSSTDETTTTIDSLSLPPNISPPPLSRAGSGIVDPDGVSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLAGAGDDAETEFLNSHSKSEIVDMLRKHTYDDELQQSTRGGRRRGNAEAASRCDEMAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGGSGSGVSPCAVAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFKSTGPDPQLYIDCKARGSGGICEVNSNNNGGSLFLPVGPVDEPVHMVRLFGVNLLKLPGSDGGVGVGYERKRKEMELFAFECSKKFKVIGAL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00607 360 FunFam AP2 domain-containing protein RAP2.8 53 110 - -
Spst10g00607 360 CDD AP2 53 108 IPR001471 GO:0003700|GO:0006355
Spst10g00607 360 Pfam B3 DNA binding domain 172 268 IPR003340 GO:0003677
Spst10g00607 360 ProSiteProfiles B3 DNA-binding domain profile. 172 284 IPR003340 GO:0003677
Spst10g00607 360 Gene3D AP2/ERF domain 53 110 IPR036955 GO:0003700|GO:0006355
Spst10g00607 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 49 332 IPR044800 GO:0003700
Spst10g00607 360 MobiDBLite consensus disorder prediction 1 19 - -
Spst10g00607 360 Pfam AP2 domain 53 101 IPR001471 GO:0003700|GO:0006355
Spst10g00607 360 SUPERFAMILY DNA-binding domain 53 109 IPR016177 GO:0003677
Spst10g00607 360 Gene3D - 161 288 IPR015300 -
Spst10g00607 360 MobiDBLite consensus disorder prediction 1 58 - -
Spst10g00607 360 CDD B3_DNA 171 267 IPR003340 GO:0003677
Spst10g00607 360 SMART rav1_2 54 115 IPR001471 GO:0003700|GO:0006355
Spst10g00607 360 SUPERFAMILY DNA-binding pseudobarrel domain 171 272 IPR015300 -
Spst10g00607 360 ProSiteProfiles AP2/ERF domain profile. 54 109 IPR001471 GO:0003700|GO:0006355
Spst10g00607 360 SMART B3_2 172 284 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00607 Spst-Chr10 6130413 6131495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00607 5 360 B3 DNA Binding Superfamily AT1G25560 57.106 4.39e-131 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Spst10g00607 B3 1.2e-25 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00607 10 6130413 6131495 Spst10g00607 10 6130413 6131495 ECH