Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00605 ATGTATTTCTTCACTGAGAAAATGCAGCGTTCAAAGATGGGGTTCCCTGACTACATCCAAGCATTGGAAGAAGAACGCCGTAAGATTCAGGTGTTCTGCAAAGAGCTTCCTCTTTCCTTGGAACTGGTTGCCCAAGCCATCGAAGCTTGCAAACAGCAGTTGTCTGGCACCACGACCGAGTATAATTTGAATGGTCAATCGGAGTGTTCGGAGCGGACAACATCATCCGAGGTACCAGTTTTGGAGGAGTTCATTCCGATCAAGAAAAGGGCATCGTCATCCTCCCCTTGTTGCGATGAAGATGATGAAGACGATGAACATCATTTGCAAAGGGTTTCGAATGAGAATAATAAGAACAGTGATAAGAGGAAATCCGACTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCCCCAGCTGAGGAGGATGTGACTAGGAAAGTGTCTGGGATGGAATTGAAGAGAAGTGGAAGTGGTGGTGGTGCTTTCCAGCCATTCCACAAGGAAGAAAGACCTGCAAAGGCAACTGAATCATTGAGTAAAGCACCCTGTTCAACCCGGGTAGCTGCGACGAGTTCTAGCGCCGGTGAAGTCACCCCAGAAAAAAATCTGAATGATGGACAGAGAAAGCAGCGCAGGTGTTGGTCTCAGGACTTGCATAAGCGCTTCTTGCATGCCCTTCAGCAACTTGGGGGTGCAGATTCTGCCACACCAAAACAAATCAGAGAGCAAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATCTACAGAAATACCGTTTGCACACTAGAAGGCCAAGTCCCTTGGTTCACAACAGTTCCAATCCACAAGCAGCGCCTTTTGTCCTTGTAGGGAACATTTTTGTTCAGTCACCAGAATATGCAGCTGTAACTACCTCAACAGCATCAAGAGAAGTGAGCACAGTTGCAGCACCTGCTGGAATTTATGCACCAGTGGCCACACATCCTACACCTGTTTCACAACCATCAGCTGATTCAACTAAGAGGTCACAGTTTAAGAAATTGAAGCATTTTGAGCATTCAAATTCAGATGAAAGGGCTCATCACAGTGAAGGAGCTCTTCATTCAAATTCCCCTACTTCATCCTCATCCACACACACCTCTACTTCTCCTGGTTATTAA 1152 0.4601 MYFFTEKMQRSKMGFPDYIQALEEERRKIQVFCKELPLSLELVAQAIEACKQQLSGTTTEYNLNGQSECSERTTSSEVPVLEEFIPIKKRASSSSPCCDEDDEDDEHHLQRVSNENNKNSDKRKSDWLRSVQLWNPDPPAEEDVTRKVSGMELKRSGSGGGAFQPFHKEERPAKATESLSKAPCSTRVAATSSSAGEVTPEKNLNDGQRKQRRCWSQDLHKRFLHALQQLGGADSATPKQIREQMNVDGLTNDEVKSHLQKYRLHTRRPSPLVHNSSNPQAAPFVLVGNIFVQSPEYAAVTTSTASREVSTVAAPAGIYAPVATHPTPVSQPSADSTKRSQFKKLKHFEHSNSDERAHHSEGALHSNSPTSSSSTHTSTSPGY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00605 383 MobiDBLite consensus disorder prediction 179 201 - -
Spst10g00605 383 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Spst10g00605 383 MobiDBLite consensus disorder prediction 175 210 - -
Spst10g00605 383 FunFam Myb family transcription factor 209 267 - -
Spst10g00605 383 MobiDBLite consensus disorder prediction 104 124 - -
Spst10g00605 383 MobiDBLite consensus disorder prediction 339 362 - -
Spst10g00605 383 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Spst10g00605 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Spst10g00605 383 MobiDBLite consensus disorder prediction 363 383 - -
Spst10g00605 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 341 IPR044787 GO:0003700|GO:0006355
Spst10g00605 383 MobiDBLite consensus disorder prediction 322 383 - -
Spst10g00605 383 Gene3D - 209 267 - -
Spst10g00605 383 MobiDBLite consensus disorder prediction 91 124 - -
Spst10g00605 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00605 Spst-Chr10 6108943 6110744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00605 4 328 G2-like Transcription Factor Family AT1G68670 47.262 2.34e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst10g00605 Myb_DNA-binding 3.1e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00605 10 6108943 6110744 Spst10g00605 10 6108943 6110744 ECH