Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst10g00333 ATGGCAGATCAAGCCCGAGATTCGGGAACCGTTTCGGTTGAAGCCACTCAAGAAAGAAGGAAACTTCCAAACTTTCTGCTATCTGTGAGACTTAAGTATGTCAAGCTTGGGTACCACTACTTAATCTCCAATGCTATGTACCTTTTGCTCATACCTCTTCTTGGGGTAGCTTCTGCTCATCTGTCAACCATCTCTTACCTAGATTTTGCTCAACTATGGGAAAACCTTAAGTTCAATCTTGTCTCCGTGACTCTATGTTCTAGCCTTATAGTGTTCCTTGTCACCTTTTACTTCATGAGCCGTCCAAGAGGTGTTTACTTGGTGGATTTTGCATGTTACAAGCCAGAGCCAGACTGCACTTGCACAAGGGAAATTTTCATGGACAGGTCTGTGGAAACTGGGGTGTTTTCAGTGGAGAACTTGGCCTTTCAGAAGAAGATACTTGAGAGGTCTGGTTTGGGGCAGAAGACTTACTTGCCTCCAGCAATCTTGAGTGTCCCAGCAAACCCGTGTATGGCTGAAGCAAGGAAAGAAGCGGAGCAAGTGATGTTTGGAGCTATTGACCAGCTTCTGGCAAAAACTGGGGTGAAGGCTAAGGATATTGGGATTTTGGTGGTGAATTGTAGCTTGTTCAATCCCACACCATCTCTCTCTGCAATGATTGTAAACCACTACAAGTTGAGAGGGAATATCCAAAGTTATAATCTTGGAGGCATGGGTTGCAGTGCTGGGCTTATCTCCATAGACCTTGCCAAACAGCTCCTCCAGGTTCATCCAAACTCTTATGCCTTAGTGGTGAGCATGGAGAATATCACTCTCAACTGGTATTTTGGCAACAACCGGTCAATGCTAGTCTCAAATTGTCTCTTCAGAATGGGTGGAGCTGCGGTCCTCCTCTCCAACAAGACTTCTGATCGCAGAAGAGCCAAATACCAATTGATCCATACAGTGCGTACTCATAAGGGTGCAGATGACAAGTCTTATGGTTGCGTTTTCCAAGAAGAAGATGAGAAGAAAACAATTGGTGTGGCACTCTCAAAGGACTTAATGGCTGTTGCTGGAGAAGCCCTCAAGACCAATATCACAACACTTGGCCCATTAGTCCTTCCCATGTCAGAGCAGCTCTTGTTTTTCGCAACATTGGTGGCTAGAAAAGTATTCAAGATGAAGATAAAGCCATACATCCCTGACTTTAAGCTAGCTTTTGACCACTTTTGCATCCATGCTGGAGGAAGAGCAGTGTTGGATGAGTTGGAGAAGAATCTTGAGCTCACCGATTGGCACATGGAGCCTTCAAGAATGACTCTCTACAGGTTTGGTAACACTTCTAGCAGTTCATTGTGGTATGAATTGGCCTACACTGAAGCTAAAGGGAGGATCAGAAAAGGTGACAGGACTTGGCAGATTGCATTTGGTTCAGGGTTCAAGTGCAACAGTGCTGTGTGGCGTGCATTGAGGACCATTAATCCTGCAAAGGAGAAAAATCCTTGGATGGATGAGATTCACGAGTTTCCTGTTCAGGTGCCTAAAGTGGCAGCCATTGGTTCCTAA 1551 0.452 MADQARDSGTVSVEATQERRKLPNFLLSVRLKYVKLGYHYLISNAMYLLLIPLLGVASAHLSTISYLDFAQLWENLKFNLVSVTLCSSLIVFLVTFYFMSRPRGVYLVDFACYKPEPDCTCTREIFMDRSVETGVFSVENLAFQKKILERSGLGQKTYLPPAILSVPANPCMAEARKEAEQVMFGAIDQLLAKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNIQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAVLLSNKTSDRRRAKYQLIHTVRTHKGADDKSYGCVFQEEDEKKTIGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKVFKMKIKPYIPDFKLAFDHFCIHAGGRAVLDELEKNLELTDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPAKEKNPWMDEIHEFPVQVPKVAAIGS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst10g00333 516 PANTHER 3-KETOACYL-COA SYNTHASE 76 507 IPR012392 GO:0006633|GO:0016020|GO:0016747
Spst10g00333 516 SUPERFAMILY Thiolase-like 91 309 IPR016039 GO:0016746
Spst10g00333 516 Pfam FAE1/Type III polyketide synthase-like protein 97 386 IPR013601 GO:0006633|GO:0016020|GO:0016747
Spst10g00333 516 FunFam 3-ketoacyl-CoA synthase 115 484 - -
Spst10g00333 516 Gene3D - 124 484 IPR016039 GO:0016746
Spst10g00333 516 SUPERFAMILY Thiolase-like 290 486 IPR016039 GO:0016746
Spst10g00333 516 CDD CHS_like 87 482 - -
Spst10g00333 516 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 402 483 IPR013747 -
Spst10g00333 516 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 516 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst10g00333 Spst-Chr10 3294862 3297078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst10g00333 20 514 Miscellaneous Gene Families AT2G26640 77.576 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst10g00333 10 3294862 3297078 Spst10g00333 10 3294862 3297078 ECH