Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02497 ATGATCCAAGAATTGTTGGGTGCTGCTACTCTCATAACAGGAGGGGATCAAAGGAAAATCTCCATTAACGGAGGAGGAGCACTTCTACTTCCACCCACAACAACATCTCCTTCTTCTCCTTCTCCTTCTCCTTCCATTACCAACACCACTTCTACACCTACCACCACCTCATCAAATTCTGAAAATCAAAACTTGAGGTGTCCGCGTTGTGATTCATCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGTTACTGGACAAAAGGAGGCGCTCTCAGGAACGTCCCCATCGGCGGTGGCTGCCGGAAAAACAAAAGCTCCGGCGTGTCCAACACGGTGGCAAAGTCAAGCGCAACAAAGATGAAAGCAGTGGCCTCTGAGCTTGGAAGATCTACTTCAGGTCATGGCTATGAACACCATGAGGTTCCACCAAATCCAATCCTGTGGGGTTCACCACAGAATACTCATCTCTTGGCTTTACTCAGAGCTGGACAAAACCAAAACCCTAACCCTAACCCTAGTTCCATGTCCATGAATGTAGTGAAGGAAGAAGGGAACTTATTAAGATCCTCTCAGTCTCACATGGTGATGACTGAGCCATTGCTTGGAAATGGACTGTTGAATCCTAGAAATATCTATGATGCTGTTGGACAAGTTCCTTCACAGTCACAGGGTATGATGTGCACCTCTTTTTGGAGAAACAATCAAGATCAGATTCAACAGCAGAATAATAATGGGTTTGTACTTGGAGAACTTCAAAGCACTAGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCATCGGTTAATTATTGCAGTGATAACTCATCACCAATGTTTCTTGGAAACATGGCTTCTTCTGCTGCTTCTTCTTCTTTATCAAATATTTTGGAGTCATCTTCAGTTCCTGGTGGCAGTGAATTTGGGTGCTGGAATCCATCCTTTACTTGGCCTGATCTTCCCACAACCAATGGTGCATATCCTTAA 1029 0.449 MIQELLGAATLITGGDQRKISINGGGALLLPPTTTSPSSPSPSPSITNTTSTPTTTSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSGVSNTVAKSSATKMKAVASELGRSTSGHGYEHHEVPPNPILWGSPQNTHLLALLRAGQNQNPNPNPSSMSMNVVKEEGNLLRSSQSHMVMTEPLLGNGLLNPRNIYDAVGQVPSQSQGMMCTSFWRNNQDQIQQQNNNGFVLGELQSTSGVQELYHKLRSSSVNYCSDNSSPMFLGNMASSAASSSLSNILESSSVPGGSEFGCWNPSFTWPDLPTTNGAYP. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02497 342 ProSiteProfiles Zinc finger Dof-type profile. 65 119 IPR003851 GO:0003677|GO:0006355
Seca9g02497 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 266 IPR045174 GO:0003700|GO:0006355
Seca9g02497 342 MobiDBLite consensus disorder prediction 23 66 - -
Seca9g02497 342 Pfam Dof domain, zinc finger 63 119 IPR003851 GO:0003677|GO:0006355
Seca9g02497 342 ProSitePatterns Zinc finger Dof-type signature. 67 103 IPR003851 GO:0003677|GO:0006355
Seca9g02497 342 MobiDBLite consensus disorder prediction 28 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02497 Seca-Chr9 38128860 38129888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02497 40 120 C2C2-Dof Transcription Factor Family AT5G65590 67.470 1.32e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca9g02497 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02497 - - gmx:778100 399.823