Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01557 ATGGAATTGGAAGCTGATCATCCAAATGGGATCCGAACCAGACCTAATTTCCCTCTTCAACTCCTAGAGAAAAAAGACGCCGCCGATGAATCATCAGAACAACAACCCTGCTCCACCACCGCACACGACGGCGTCGGCAGCGCCATCGTCAACTCTAACAACAACAACCTCCACGCGACAGAGCAGCAGAAGAAGCCGCCGCCAAAGCGGACCTCCACGAAGGACCGCCACACAAAGGTCGACGGCCGCGGCCGCCGGATCCGGATGCCAGCGGCCTGCGCCGCCAGGGTGTTCCAACTGACGCGTGAGCTCGGACACAAGTCCGACGGCGAAACCATCGAGTGGCTCCTCCAGCAAGCAGAGCCCGCCGTCATCGCCGCCACCGGAACCGGCACCATTCCCGCGAACTTCACCTCCTTAAACATCTCCCTCCGTAGCTCCGGCTCCACCATGTCGGCGCCGTCGCACTACTTCCGCGGAAGCTACTTCAACCCTAGCACGTTCTCCGCCGCGGCAGCGGCGCAACTGAGGAGCCGCGCGGAGTGGGACAGGAATATGGCAATAAGCAATAACCTGAACATGAACGTGGAAGATTCTAGAAGAAGTTCCACAACCATATTGGAGAATAATCCTTCATCTTCTATCTCAGCAATTTTGAATTTCAACCATCTCAGCAACGTGAATGCCATTCTACAAGCGAAGCAGGAGCTCCGGGAAGAGGCCAACGCCAACGCCAACGCCGCCTCCGGCGGCGGAGGACTTGAATTAGTGACTGGAGATTCCGATGGAAGTTTAGGGAGAAAGAGAAGGCCAGAGCAAGAATTGCCGTATTTGTTACAATCTAGTGTGGGGTCACTTCCATCTAGCAATCCTTCCAATACGGCAGCGTTTTGGATGGTTGCGGGTCACGGAAACCAAAGCGTGAGTGGTGGTAACAATAGCAATGGTAGCGATCCCATTTGGGCAATTCCATCTGTTGGGAATAGTGGTGTGTATAGAAGTGCTATGCCAGCTGGAAGTGGGATTCACTTCATGAATTTCGCTTCTCCAATGCCACTTATGCCTGGAAGCCAATTAATTGGTGGTAGTGGTGGTGGTACGTTTTTAACTGAAAGCAATTTGGGTATGCTTTCAGCACTTAATGCCTATAGGCAGATTCCGGCCAACGGCGTTTCGGAGTCTCCCGGAGATGATGGACATGACTCAACCAGTCAACATTCCTGA 1224 0.5368 MELEADHPNGIRTRPNFPLQLLEKKDAADESSEQQPCSTTAHDGVGSAIVNSNNNNLHATEQQKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGSYFNPSTFSAAAAAQLRSRAEWDRNMAISNNLNMNVEDSRRSSTTILENNPSSSISAILNFNHLSNVNAILQAKQELREEANANANAASGGGGLELVTGDSDGSLGRKRRPEQELPYLLQSSVGSLPSSNPSNTAAFWMVAGHGNQSVSGGNNSNGSDPIWAIPSVGNSGVYRSAMPAGSGIHFMNFASPMPLMPGSQLIGGSGGGTFLTESNLGMLSALNAYRQIPANGVSESPGDDGHDSTSQHS. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01557 407 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Seca9g01557 407 MobiDBLite consensus disorder prediction 242 272 - -
Seca9g01557 407 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 377 IPR005333 GO:0003700
Seca9g01557 407 Pfam TCP family transcription factor 71 200 IPR017887 -
Seca9g01557 407 Coils Coil 224 244 - -
Seca9g01557 407 MobiDBLite consensus disorder prediction 63 83 - -
Seca9g01557 407 MobiDBLite consensus disorder prediction 388 407 - -
Seca9g01557 407 MobiDBLite consensus disorder prediction 32 62 - -
Seca9g01557 407 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01557 Seca-Chr9 26265232 26266455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01557 1 181 TCP Transcription Factor Family AT1G69690 56.684 9.86e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca9g01557 TCP 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01557 - - gmx:100809966 545.428