Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01018 ATGAGTGGTGAAGGGGACATGTCTGATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCGAGCTCTCAAATGGGTTGTCAGATTCAAGCCTACTCTGCAACTATGAATGCTTGCAGTAGCTTAAAGAAAACAGAAGTTGAAATGCCTTGTACTGAAAACTCTGCGCAACCTGAGAATTCTTCTGATTTAAGGGATAGCAAAAAAGAGTCCCTACATAATATGCATGAAAATGAATCAAAATTAAACACCAACCCTATGGAAGATAATATGGAGACTAGCAGCACAGATCAAGATAAAGTCTTCAAGAAACCAGACAAGATTCTTCACTGTCCAAGATGCAACAGTTTGGAGACTAAATTTTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCTATTGGTGCTGGGAGACGGAAGAACAAGCACATAGCTTCTCAATACCGGCAAATTTTTGTATCTTCTGATGGAATTCCAACCACCAGGTTAGAAACCAAAGACTCTTCTAGCCACCAACTTGTCTCAACTCTTGAATCTGGTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTATTAAAATTTGGTCCAGATGCCCCTCTCTGTGAATCCATGGAATCAATGCTTAATCTTAGAAACCAGCAAAGAAATGTTGATGCAAACTCTATGAATTGTACAGAAAATGGAGAGGAAGAGGTATCCTTATGTGGATCTTCTGTGACAAATGCCTGCACTCAAGGAAATGAATTGTCAGAAAATAGTACATCAAAACCTTTACAGTGTTACCCTGTTCCTCCATGGGTACTTCCTTGGAATCCAGGTTGGAACAATGTTGCTTCCATGGCAGGAGTTCATCCATCTTCACTGCATCCGGCTACAATGCGGTGGTGTCCCGCGCCAATGGTGGCCGTTCCAACCATGTGTCCACCAAGCATTCCCTTGCAAATTGTTCCTGGATCATACTGGAATGGAACACCTTTGTGGGCTGCTGGAAATGGGACAGTTTCAATAGGTTCCAATGGTTGCCTTTCACCATCTTCCTCTACTAGTAACAGCTGCTGCTCAGGCAATGGCCCACCAACCCTTGGCAAACACACTAGAGACACTGTTTTCACAGATGAACAGAAATCAGAAAAGTGTGTTTTGATTCCAAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAGAAGTCCTATATGGGCTACATTAGGTATCAAGCCTGAAAACCAGCAATTTGTATCAGAAGATGCTGTTTCCAATAAAATAAAACATAAAGGAGAAGGCAAAGACCGTGTATTAGGAGTGTCTCAAATCTTGGAAGCTAATCCTGCAGCTATTTCTAGAGTTCATGCATTCCAGGAGAGCACATAA 1461 0.4216 MSGEGDMSDKDPGIRLFGRKIPVPECQIPASSQMGCQIQAYSATMNACSSLKKTEVEMPCTENSAQPENSSDLRDSKKESLHNMHENESKLNTNPMEDNMETSSTDQDKVFKKPDKILHCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHIASQYRQIFVSSDGIPTTRLETKDSSSHQLVSTLESGAVFRSSTDNGTVLKFGPDAPLCESMESMLNLRNQQRNVDANSMNCTENGEEEVSLCGSSVTNACTQGNELSENSTSKPLQCYPVPPWVLPWNPGWNNVASMAGVHPSSLHPATMRWCPAPMVAVPTMCPPSIPLQIVPGSYWNGTPLWAAGNGTVSIGSNGCLSPSSSTSNSCCSGNGPPTLGKHTRDTVFTDEQKSEKCVLIPKTLRIDDPNEASRSPIWATLGIKPENQQFVSEDAVSNKIKHKGEGKDRVLGVSQILEANPAAISRVHAFQEST. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01018 486 MobiDBLite consensus disorder prediction 71 86 - -
Seca9g01018 486 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Seca9g01018 486 MobiDBLite consensus disorder prediction 87 101 - -
Seca9g01018 486 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Seca9g01018 486 PANTHER CYCLIC DOF FACTOR 2 9 486 IPR045174 GO:0003700|GO:0006355
Seca9g01018 486 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Seca9g01018 486 MobiDBLite consensus disorder prediction 59 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01018 Seca-Chr9 19299271 19302861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01018 11 486 C2C2-Dof Transcription Factor Family AT5G39660 35.294 2.88e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca9g01018 zf-Dof 9.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01018 - - ccaj:109792807 800.045