Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07915 ATGCAAAGCTTCAAGACATCTGAATCAAACTCACGACTATTTTGCCATTCTTCCTTCTTCTTTGGGGGAGATGACACCAGCCGAAATCCAACTCCTTTCTCTGATCTTCAACGTTCATTTCAACAACACGATGCTGTTGATTTAAGCTCAAGCTCTGTGTTTGGTGCAAAGTCGAGCAATGTCGCTGTTGTTGCAAGTAACTTGCAGTATGGGACATTCAACACTAACGTTGGGTCTGCTACAACAGGGGAAGTGTGCATTGAGACAGGTCAGCAGCCACTGTTCAACAAAGGAACCACTCTCGTTTCAGGGAACGAGAATTGGGGTGATTCAGGCATGGCAGAAAATAGTCAACAAACTGAAGATACTTCCACAGATATTGACGCTGATGATAAAAACCAATGTTTCTCAACGGGGTCGTGGTGCAATGGAGTTCGGCATGGGGCACTTGTAACTGTGGACTCCAAGGATCAAAGTAAGAGTAAGGTTAAAGCTGAAGACCAGAAGAGCCTTCGTAGGCTGGCCCAGAATCGGGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTGCAGCAATTGGAGAACAGTCGACTTAGACTTGCTCAAATAGAAGAAGAGCTTCAACGAACACGTCAGCAGGGTGTATTTATTGCAACTGGAATTGCGGGGGATCATGGTCATTCAGTTGTTGGAAATGGTGTGTTAGCATTTGATATGGACTATACCCGTTGGGTTGATGAGCATCAACGTCTGATCAATGACATAAGATCAGCTATGAATTCTCAAATGGGTGATAATGAACTGCAGCTTCTTGTTGATGGTGTCATGGCACACTATGATGAATTATATAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCCGGGCTGTGGAAGACACCTGCTGAAAGATGCTTCATGTGGCTTGGTGGATTCCGTCCATCTGAACTTCTCAAGATAGTTGGAAAACACCTTGAGCCCTTAACCGATCAGCAGTTGATGGGAATTTACAATCTGCAGCAGTCTTCTCAGCAGGCTGAGGATGCTTTATCTCAAGGCATGGAAGCATTGCAACAATCTCTTTCAGAGACACTTTCATCCACCTCCCTAGGACCTGCTGGTTCTGGAAATGTTGCTGAGTATATGGGCCAAATGGCAATTGCAATGGGCAAGCTTGCCACACTAGAGAGTTTCCTTCATCAGGCTGACCTCTTGAGGCAACAAACTATGCAACAGATGCAACGAATTTTGACCACACAACAAGCTGCTCGTGCTCTCCTTGTCATAAATGATTACATTTCAAGGATTCGGGCACTTAATTCATTATGGTTAGCATGCCCTAAAGAGTACTAG 1371 0.4478 MQSFKTSESNSRLFCHSSFFFGGDDTSRNPTPFSDLQRSFQQHDAVDLSSSSVFGAKSSNVAVVASNLQYGTFNTNVGSATTGEVCIETGQQPLFNKGTTLVSGNENWGDSGMAENSQQTEDTSTDIDADDKNQCFSTGSWCNGVRHGALVTVDSKDQSKSKVKAEDQKSLRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQIEEELQRTRQQGVFIATGIAGDHGHSVVGNGVLAFDMDYTRWVDEHQRLINDIRSAMNSQMGDNELQLLVDGVMAHYDELYRLKSIGAKADVFHILSGLWKTPAERCFMWLGGFRPSELLKIVGKHLEPLTDQQLMGIYNLQQSSQQAEDALSQGMEALQQSLSETLSSTSLGPAGSGNVAEYMGQMAIAMGKLATLESFLHQADLLRQQTMQQMQRILTTQQAARALLVINDYISRIRALNSLWLACPKEY. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07915 456 SMART brlzneu 165 218 IPR004827 GO:0003700|GO:0006355
Seca8g07915 456 Gene3D - 168 216 - -
Seca8g07915 456 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 167 211 IPR004827 GO:0003700|GO:0006355
Seca8g07915 456 PANTHER TRANSCRIPTION FACTOR TGA9 108 455 - -
Seca8g07915 456 MobiDBLite consensus disorder prediction 105 123 - -
Seca8g07915 456 CDD bZIP_HBP1b-like 169 221 - -
Seca8g07915 456 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
Seca8g07915 456 Coils Coil 188 215 - -
Seca8g07915 456 Pfam bZIP transcription factor 168 198 IPR004827 GO:0003700|GO:0006355
Seca8g07915 456 Pfam Seed dormancy control 254 327 IPR025422 GO:0006351|GO:0043565
Seca8g07915 456 FunFam BZIP family transcription factor 168 217 - -
Seca8g07915 456 ProSiteProfiles DOG1 domain profile. 236 452 IPR025422 GO:0006351|GO:0043565
Seca8g07915 456 MobiDBLite consensus disorder prediction 105 127 - -
Seca8g07915 456 SUPERFAMILY Leucine zipper domain 169 213 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07915 Seca-Chr8 176805701 176810152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07915 3 455 bZIP Transcription Factor Family AT1G68640 57.415 1.83e-173 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g07915 DOG1 2.9e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07915 8 176805701 176810152 Seca8g07915 8 176805701 176810152 ECH