Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07912 ATGTCAATGGCTGATGAACCACTATATCCAATAGCGGTGCTTATAGATGAGCTGAAAAATGATGACATACAGCTGCGGTTGAATTCAATTCGCAGGCTATCAACGATTGCACGCGCTCTTGGGGAGGAGCGAACCCGTAGAGAATTAATTCCATTTTTGAGTGAAAATAATGACGATGATGATGAAGTACTTCTTGCAATGGCAGAAGAGTTGGGAGTGTTCATTCCTTATGTTGGGGGAGTCGAACATGCCAGTGTGTTGCTCCCACCTCTGGAGACACTTTGCAGTGTAGAGGAAACCTGTGTGAGAGATAAAGCTGTGGAGTCACTGTGTAGAATTGGATCTCAAATGAGGGAGAGTGATTTGGTTGAATATTTCATCCCATTGGTGAAGAGATTGGCAGCAGGTGAATGGTTTACTGCCCGAGTCTCTGCATGTGGACTATTCCATATTGCATACCCAAGCGCACCAGAAACATCAAAGACAGAATTGAGGTCAATTTACAGTCAGTTGTGTCAGGATGACATGCCTATGGTTAGAAGGTCTGCTGCATCAAATCTTGGGAAATTTGCTGCAACTGTTGAGTATGCTCATTTGAAGGCAGACATCATGTCAATTTTTGATGATCTTACACAGGATGATCAAGATTCTGTTAGATTGTTGGCTGTGGAGGGCTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGATTGCGTTGCACATATACTCCCGGTTGTTGTTAATTTCTCCCAGGATAAATCTTGGCGTGTGCGTTACATGGTGGCAAATCAATTATATGAGCTTTGTGAAGCTGTAGGCCCTGAACCTACCAGAACGGAATTGGTCCCTGCCTATGTGCGGTTACTTCGAGATAATGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAGTCCTGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCATCAGATTCTTCACAGCATGTTCGCTCTGCTTTGGCATCAGTAATAATGGGAATGGCTCCAGTATTAGGGAAGGAAGCAACAATTGAGCAGCTTCTTCCAATTTTCCTTTCCCTTCTGAAAGATGAATTTCCTGATGTGCGCCTAAACATCATCAGCAAGCTTGATCAAGTGAATCAGGTTATTGGAATCGATCTGTTATCTCAATCTTTATTACCAGCAATTGTTGAGCTTGCTGAGGATAGGCACTGGAGGGTTCGGCTTGCAATTATTGAGTATATACCCTTATTGGCAAGTCAATTGGGGGTGGGGTTTTTCGATGACAAGCTCGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGGTCCATTCAATTCGTGAAGCAGCTGCCAACAACTTAAAACGCCTTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCACAGTTAATAGTATCATTTCATTGTACGGGACAGGTTTTGGAGATGATTAACAATCCCCACTATTTGTATCGAATGACCATTCTTCGTGCTGTCTCCCTGCTTGCTCCTGTAATGGGCTCTGAAATCACTTGTTCAAAATTGTTGCCTATTGTTGTTTCAGCATCAAAAGACAGAGTGCCCAACATAAAGTTCAATGTAGCAAAGGTATTAGAGTCTATCTTCCCCATCGTTGATCAGTCTGTTGTAGAAAAAACAATCCGTCCATGTCTGGTTGAGCTCAGTGAGGATCCTGATGTTGATGTACGATTTTTTTCCAACCAAGCACTACAGGCAATTGATCATGTCATGATGTCCAGCTAG 1794 0.4342 MSMADEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRRELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHASVLLPPLETLCSVEETCVRDKAVESLCRIGSQMRESDLVEYFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPETSKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADIMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVVVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPDLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQLIVSFHCTGQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPIVVSASKDRVPNIKFNVAKVLESIFPIVDQSVVEKTIRPCLVELSEDPDVDVRFFSNQALQAIDHVMMSS. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Seca8g07912 597 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Seca8g07912 597 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 591 - -
Seca8g07912 597 Pfam HEAT repeats 361 461 - -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Seca8g07912 597 Gene3D - 2 593 IPR011989 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 87 125 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 564 597 IPR021133 -
Seca8g07912 597 SUPERFAMILY ARM repeat 8 590 IPR016024 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 525 563 IPR021133 -
Seca8g07912 597 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Seca8g07912 597 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07912 Seca-Chr8 176768871 176777666 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07912 8 176768871 176777666 Seca8g07912 8 176768871 176777666 ECH