LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07907	ATGGCCACCGATGCCCACGACTCTCGTCGCAAGCATCGCCGATCATCATCTCCGGAGGTCGTCGAAAGAACCTCGAAGCGCCACAAGCACCGCCACCGCCACCGCCACGGGAGCAAAAAACGCGATGAAGAGATTGAATACGATGGGGGAACAGTTGCCGCGGTTCATTCTCCAATTCCCACTCCTAATCCTGCTCCGCACAGCCATCTCCCTGACGATGATGTGGAGGAGGGAGAGATTCTCGAAGACGAGGCTCTCGATGGCGTTGGAAAAAAGCAGACGGAATCTGATGTCGAACCTGGTGAAATCGAGGTGACAGGAGATCGAGATGCACGATCTGATGAGAAAAATCCGGGAATTCCCACTAGAAGTTCAAAATCTAAAAGTGTGGACTTTAGGAACGATAAATTTACTAGTCCTGCATTGGATGCAGAAGATGGGACATTGCGTCAGAGCCACACTGGTTGTGGAATTCATGAATATGATGGTTCTCCAAACCACTCAAGGGCTGAGACTCAAGGTGGGAGGGATGCTCGAGTTAGTACAGTTGGTTTGGGCAATGGGTATTTGGATCCTAAATCTTCCAAAGGGGATAAGTTGCATAATGGGGGAGTTGGACATTTTAAAGGAAATGAGAAACTAAAGGGTGACTTTGATGATGAAGCACTGGAGGCTAATAGAAAGGAAGTAAACCATCGGCCTTCATCATCTGAAAGTGGAGGAGAAAAATATAGAATGTCAGGAAGTTCTCCTTCTCATGATAGATACAGAAGTCGATCAAGATCAACTGGTCATACTAGGGACAGGTCTCGTTCTCGTAGTATAGTAGAAGAATATGCTCATTCCAAGAGAAGGCACTCTAGGGAACAAGGGTCCCTTTATTATACTAGCAGACATAAGACTGACTATGACCTTGATGAGGAAAGAGTGAGAGCAAGCAGAAGGGAGCATCGTCATGGCAGTATAGATTTGGTGGATGATGATAGAAGGGAACACGGTACCAGATATCACAGTCGGGAGACCCGGGACAGAGATAGGAGTAGGGATAGAGATGTGGATAGAGACAGAGACTTACACAGGGAAAAGAAACGAGAGGAAGCAAGCAGGAATAAGGAGGTTGATTGGGTGCGAAGAAGGGAAAAAGAACGTGAAAGGAGCCGTGAGAAGTATAGAAGGGATGTGGAGAAAGATAGGAGCAGGGAAAGGGAGGAGGATAGGGATAGGAGGAGAGAAAAGGAAAGAGATAGGAGCTGGGAGACAGCATTTGAGAGGGATAGAAGAAGGGAAAAGGAAAGAGACAGGAGCAGGGACAGAACAAGGGGTGGCGAGAGAGATAGAGACTGGGAGAGTGAAAGGGATTATAGGAATCGAGAAAAAGATAACATTAAGGAGAGGGACAGGCGAGATGATAGATATAGGCACAAGGATAAAGATGCTGTGAATGGTAAGGATAAGCATCTGCGTCATGACGATGGTAATGACAGTGGCGATAGATATAGAAAGCATTCAAGACATGAAGAAAATGAATACCGTGCAGAGAGAAAAAGAAATTCTGACCATCCTGTAAAAGTTTACAACTCTATGGGAAGTACCATTGAAGAGGATGAAAGGAAATTAAAAAGCGGTGAGGTTGAACAAGATGACTTAGATGAGGGTACATTGCAATTACCCGAACAAGAAGAAGAAGATCTCAACAGGATCAAAGAGGAAAGTAGAAGGAGAAGGGAGGCGATAATGGCGAAATACAAGAAGCAGAATCAGCAGGTAGAACAAATAGTTGGAAATGAAGAAAAAGACATGGGTGCGGACATTCCTACTGGCATTTCTGAAGCAATTGATGGTAAAAATGATGATGTTGATGATGCGGAAGCAGCAGAACCATCATTTGCTGTTGGGAAATCTCCTGAAAATGTAAAGGTTGCCTCAGAGAAGATATCTGGTGCGGGGGGCCTGGGAGAGGGTACTCCAAAGAGTGAGAGGTCAGCTGAGAAGTTTTGTGATGATATATTTGGTGAGACACCAACTGGACTTCGGAAATCAGGAAAAGGAGATGGTTTACTGATTGAGAGGGTTGGCCTACATGACAATTGGGATGATGCAGAGGGTTATTACAGTTATCGTTTTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACTGTTGTACGGGCAAAGAATCTAAAACCTGGTAATGGTGAGCCAGAAGTAGTAGCAATAAAAATTATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTGATATTGAAGAAGTTAGTAGGTGCAGATCCAGATGATAAACGTCACTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGAAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACTGCTGTGAGAGCATATGCAAAACAGCTTTTTATTGCGCTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGCGATATAAAGCCTGATAATATGTTGGTGAATGAGGCCAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGCAAGAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTACACAGGGAAGGTTCTTTTTCCAGGGCTTACAAACAATGACATGTTGCGTCTTCACATGGAATTGAAGGGCCCTTTTCCAAAGAAGATGCTAAGAAAGGGAGCATTTACTGAACAGCATTTTGATCAGGACCTGAATTTTCTTGCTACAGAGGAGGATCCTGTAACAAAAAAGACCATAAAGCGGATGATTCTCAACATAAAGCCAAAAGATATTGGGACAATTATTGCTGGCTCTCCTGGGGAGGATCCAAAAATGTTATCTAACTTTAAGGATCTTCTGGATAAAGTTTTTATCTTGGATCCAGACAAGAGGTTGACAGTCTCACAAGCATTGAATCACCCTTTCATCACTGGCAAGTGA	3105	0.4361	MATDAHDSRRKHRRSSSPEVVERTSKRHKHRHRHRHGSKKRDEEIEYDGGTVAAVHSPIPTPNPAPHSHLPDDDVEEGEILEDEALDGVGKKQTESDVEPGEIEVTGDRDARSDEKNPGIPTRSSKSKSVDFRNDKFTSPALDAEDGTLRQSHTGCGIHEYDGSPNHSRAETQGGRDARVSTVGLGNGYLDPKSSKGDKLHNGGVGHFKGNEKLKGDFDDEALEANRKEVNHRPSSSESGGEKYRMSGSSPSHDRYRSRSRSTGHTRDRSRSRSIVEEYAHSKRRHSREQGSLYYTSRHKTDYDLDEERVRASRREHRHGSIDLVDDDRREHGTRYHSRETRDRDRSRDRDVDRDRDLHREKKREEASRNKEVDWVRRREKERERSREKYRRDVEKDRSREREEDRDRRREKERDRSWETAFERDRRREKERDRSRDRTRGGERDRDWESERDYRNREKDNIKERDRRDDRYRHKDKDAVNGKDKHLRHDDGNDSGDRYRKHSRHEENEYRAERKRNSDHPVKVYNSMGSTIEEDERKLKSGEVEQDDLDEGTLQLPEQEEEDLNRIKEESRRRREAIMAKYKKQNQQVEQIVGNEEKDMGADIPTGISEAIDGKNDDVDDAEAAEPSFAVGKSPENVKVASEKISGAGGLGEGTPKSERSAEKFCDDIFGETPTGLRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLKPGNGEPEVVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKTIKRMILNIKPKDIGTIIAGSPGEDPKMLSNFKDLLDKVFILDPDKRLTVSQALNHPFITGK.	1035

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g07907	1034	ProSiteProfiles	Protein kinase domain profile.	716	1031	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07907	1034	Pfam	Protein kinase domain	718	1031	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07907	1034	MobiDBLite	consensus disorder prediction	84	121	-	-
	Seca8g07907	1034	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	843	855	IPR008271	GO:0004672\|GO:0006468
	Seca8g07907	1034	SMART	serkin_6	716	1031	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca8g07907	1034	MobiDBLite	consensus disorder prediction	1	24	-	-
	Seca8g07907	1034	Coils	Coil	568	599	-	-
	Seca8g07907	1034	MobiDBLite	consensus disorder prediction	530	547	-	-
	Seca8g07907	1034	FunFam	serine/threonine-protein kinase PRP4 homolog	687	775	-	-
	Seca8g07907	1034	MobiDBLite	consensus disorder prediction	1	569	-	-
	Seca8g07907	1034	MobiDBLite	consensus disorder prediction	194	239	-	-
	Seca8g07907	1034	Gene3D	Transferase(Phosphotransferase) domain 1	776	1032	-	-
	Seca8g07907	1034	SUPERFAMILY	Protein kinase-like (PK-like)	703	1033	IPR011009	-
	Seca8g07907	1034	Gene3D	Phosphorylase Kinase; domain 1	687	775	-	-
	Seca8g07907	1034	CDD	STKc_PRP4	715	1031	IPR044092	GO:0004674\|GO:0006468\|GO:0045292
	Seca8g07907	1034	FunFam	Serine/threonine-protein kinase PRP4 homolog	776	1032	-	-
	Seca8g07907	1034	MobiDBLite	consensus disorder prediction	248	521	-	-
	Seca8g07907	1034	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	409	1032	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07907	Seca-Chr8	176731960	176739396	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07907	712	1033	MAP Kinase Gene Family	AT2G18170	31.250	7.15e-27	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Seca8g07907		Pkinase	3.5e-47	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca8g07907	8	176731960	176739396	Seca8g07907	8	176731960	176739396	ECH