Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07862 ATGGACTACAACACCAAAACAACAAACCCCACTTCCCCACCGCGCCTAAAGCTCTTTGGCTTCAGCGTCCATGAAGACTCCTTCTCCTTCCAAGAAAACGAGGTGCTGCTGCATGAAGACCTACCAGACTCAACCACAAAAGCCACCTCCACTTCCTCCTCCCCATCCGGTTCACCGGACTCCACCGGAGGCGGCGGAGGTGACTCTTTCCCTCCTTCCTCCGGTGACCGGAAATACGAGTGCCAGTACTGTTGCAGAGAATTTGCAAATTCACAAGCACTTGGTGGACACCAAAACGCCCACAAGAAAGAGCGTCAACAACTCAAGCGTGCACAGTTACAGGCCACACGAAACGCTGCCGTTTCGTTCGTGCGGAACCCTATCATCTCCGCCTTCGCCCCTCCGCCGCACCTGCTGGCTCCGCCGGGGTCCGTGATGGTCCCGGGAGCCCCGTCCTCATGGGTGTACGTGCCGCCACGTGCCGCGCCTCCTCCCTTCCACGTGTCAGTATCACACGGCTGTGCGTTCCCGTCGGCGAACTGCAACAACATGAGTAATAATAATATCACCACCATAACGGGTGCGAAATCAGCGGGTGTAGGGATGTTTCCTTATGTTGGCGTTGTAGGGGATTCGCCATCCGCATTGTCAACGATGCAGGTACAGGCCCGGGCCCACCACGCCAGAATGGACGGGCCCTCTTTGAGTAGGTTCTCAAAAGGGGACGGTGGGCCCAATTTTGATGATGCATTGGGCTTGGACTTGCATCTTAGTCTTGCGCCAGCTGCGCCGTGA 795 0.5686 MDYNTKTTNPTSPPRLKLFGFSVHEDSFSFQENEVLLHEDLPDSTTKATSTSSSPSGSPDSTGGGGGDSFPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLAPPGSVMVPGAPSSWVYVPPRAAPPPFHVSVSHGCAFPSANCNNMSNNNITTITGAKSAGVGMFPYVGVVGDSPSALSTMQVQARAHHARMDGPSLSRFSKGDGGPNFDDALGLDLHLSLAPAAP. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07862 264 Gene3D Classic Zinc Finger 69 126 - -
Seca8g07862 264 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Seca8g07862 264 PANTHER ZINC FINGER PROTEIN 5 7 263 IPR044299 GO:0010090
Seca8g07862 264 MobiDBLite consensus disorder prediction 34 74 - -
Seca8g07862 264 SUPERFAMILY beta-beta-alpha zinc fingers 75 106 IPR036236 -
Seca8g07862 264 FunFam Zinc finger protein GIS3 67 129 - -
Seca8g07862 264 MobiDBLite consensus disorder prediction 43 63 - -
Seca8g07862 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07862 Seca-Chr8 176056035 176056829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07862 1 262 C2H2 Transcription Factor Family AT1G68360 45.000 1.40e-55 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07862 8 176056035 176056829 Seca8g07862 8 176056035 176056829 ECH