Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07840 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTACCAAGATAAACAGGATGATGGCATAATTGATCTGGGTCTTAGCCTTGGAACTGTTCAACATGAAGCATATCATTCTTCTGGCAACTGTTTGGATTCAGTGTATGTTGATGACCTTATGGGTTGGCCTCACTCTAATCTCAATCTGAAGAATTCAAGCACAATGCATTCTAGATCTGTCCATGAAAACTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGATGGGCATATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTTCTTGATCATGGAGGATACTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAATCTCTGTGTGGTTTACGATTGTTTCAATCAGGATCAGAGTATTCATTGTTGTACAAAGACAGAGAAGATAATTGGAAGGCTGTCGGTGATGTCCCATGGAAAGAGTTTGTGGAATGTGTGAAGCGGTTGAGGATTGCAAGAAAGAATGGAGGCTTTGTTTCCTGTTCATACACCTAA 579 0.4007 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSGNCLDSVYVDDLMGWPHSNLNLKNSSTMHSRSVHENFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMFGSQSLCGLRLFQSGSEYSLLYKDREDNWKAVGDVPWKEFVECVKRLRIARKNGGFVSCSYT. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07840 192 Pfam AUX/IAA family 57 182 IPR033389 -
Seca8g07840 192 Gene3D - 90 188 - -
Seca8g07840 192 ProSiteProfiles PB1 domain profile. 96 184 IPR000270 GO:0005515
Seca8g07840 192 SUPERFAMILY CAD & PB1 domains 96 179 - -
Seca8g07840 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 56 182 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07840 Seca-Chr8 175837666 175839414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07840 86 184 B3 DNA Binding Superfamily AT1G34390 31.313 3.96e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Seca8g07840 AUX_IAA 2.9e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07840 8 175837666 175839414 Seca8g07840 8 175837666 175839414 ECH