Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07836 ATGCTTAGTAAAGGTGGTGGTACTGATGGGGTTGAAGTGAAAAGGGTGTTTATTGGAGCAGGATGCAACAGAATAGTGAACAACGTTTCCTGGGGTGCTTCTGGTTTGGTTTCTTTTGGAGCTCATAACGCCGTTGCTATTTTCTGCCCCAAGAGTGCTCAAATTTTGACTACTCTTCCGGGTCACAAGGCCGTTGTGAATTGCACCCACTGGCTTCCATCCAGCAAGTTTCTATTTAAAGCAAAAGAATTGGAGCAGCATTATTTGCTATCTGGAGATGCAGATGGTACTATTATTCTGTGGGAACTCTCCCTCATTGATCGGAAGTGGAGGCAAGTATCACAACTGCCACAATCACACAAGAAAGGTGTTACATGCATTAATGGAATTATGCTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGCACTGTTTGTGTATGGGAACTGGTATTTCCACTGACAGGCAGAGGTGACTGTAAACTATCATGCCTGGACTCTTTCTCTGTTGGTTCTAAATCTATGGTAGCACTATCATTGGCTAAATTGCCTGGAGACAGTGGGCAAATCGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTATTGTGGTGAAAGGACAGGAAAGCTTGTACATGCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTATAAGCATTAATGGGGAAGTAAACAATATTTTTCTGGTGAGTTCATCTCAAGATAAAGGCATACGAATTTGGAAGATGGCATTACGCAGCTCTGTGTCCAATGGACATGGAATATACAGGAAGGAAGAAATAAGTTTATCATCCTATATAGAAGGTCCTGTACTCGTGGCTGGTTCGTCCTCTTTTCAGATATCCTTAGAATCTCTTTTAATTGGACATGAGGATTGGGTATATTCCGTAAAGTGGCAACCCCCTTTGATTGCATCCATCGATGGGGATGCCTATTATCAACCTCAGAGCATTTTATCTGCATCTATGGACAAGACTATGATGATCTGGCAACCTGAAAAGACTTCTGGTGTCTGGATGAATGTGGTCACCGTTGGGGAACTAAGTCATTGTGCTCTGGGGTTCTATGGTGGTCATTGGAGCCCAAGTGGAGATTCAATTTTAGCACATGGATATGGTGGATCTTTCCACCTTTGGAAAAATGTTGGTGATGATAACTGGCTGCCACAAAAGGTTCCCTCTGGTCATTTTGCATCGGTGACTGATATTGCATGGGCTAGATCTGGTGATTATGTTATGTCTGTCAGTCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTTGAGGCTTCTCTAAAAGATGGAGAATTTTGGCATGAGATAGCTCGCCCTCAGATTCATGGTCATGATATAAATTGTCTGGCAGTTGTTTATAGTAAGGGGAATCATCGTTTTGTCAGTGGAGCTGAAGAGAAAGTTGCCAGAGTGTTTGAAGCCCCGCTGTCATTTTTGAAAACATTAAATAATGCCACTTTGCAGAAGTCTTGTTCTTCTGATGCTGTCTTGATAGATGTTCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTGTCACAGAAACCTATTTATGTTCAAGCTCTACATGAGGCCCCTGAAAGAAGTGGAATCGATGGTCTTGACACTCTTGAGACTATTCCTGATGCAGTTCCGACTGTGTTCACTGAACCTCCGATTGAAGATCAATTGGCTTGGCATACGCTATGGCCTGAATCACACAAACTCTATGGTCATGGAAATGAACTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTACAGCTGTGGCAGAGGTATGGCTTTGGCAGGTGGGTTCATGGAAATCAGTTGGCCGCTTACAATCCCACAGCTTAACAGTGACACAGATGGAGTTCTCGCATGATGACAACTTTCTTTTGACTGTCTCAAGGGATCGCCAGTTCTCTGTTTTTACAATCACAAGAACAGGTACTGGGGAAATTAGTTATAGTCTTCATGCGAGGCAGGAGGGGCACAAGCGGATCATCTGGTCATGTTCTTGGAACCCACATGGTCATGAATTTGCAACAGGTTCACGGGATAAGACAGTGAAAATCTGGGCTGTTGAGAGGGATTCTTCAGTAAGGCTGCTTATGACTTTACCTCAATTTGTAAGTAGTGTGACAGCATTATCTTGGATTGGTCTCCATGATGGAAAAAATGATGGACTTCTAGCTGTTGGAATGGAAAATGGCCAAATAGAACTGTGGAGTCTGTCTTATAATAGAGAAGATGATGGGAGCATTGCAACACCAGGTTTGGCTGCTGCTCTTGTTGTACGTATAGATCCTTTTATATGCCATGCCTCTACTGTAAACCGTCTGGCATGGAGGAAAAATGAGGAAGATCACTCTGGTATGCAACTTGCTTCTTGTGGAGCTGATAATTGTGTAAGAGTGTTTGATGTAACTGTTCTGTGA 2523 0.4289 MLSKGGGTDGVEVKRVFIGAGCNRIVNNVSWGASGLVSFGAHNAVAIFCPKSAQILTTLPGHKAVVNCTHWLPSSKFLFKAKELEQHYLLSGDADGTIILWELSLIDRKWRQVSQLPQSHKKGVTCINGIMLSQTEAMFASTSSDGTVCVWELVFPLTGRGDCKLSCLDSFSVGSKSMVALSLAKLPGDSGQIVLAMGGLDNKIHLYCGERTGKLVHACELKGHTDWIRSLDFSLPISINGEVNNIFLVSSSQDKGIRIWKMALRSSVSNGHGIYRKEEISLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVKWQPPLIASIDGDAYYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPSGDSILAHGYGGSFHLWKNVGDDNWLPQKVPSGHFASVTDIAWARSGDYVMSVSHDQTTRIYAPWKVEASLKDGEFWHEIARPQIHGHDINCLAVVYSKGNHRFVSGAEEKVARVFEAPLSFLKTLNNATLQKSCSSDAVLIDVQILGANMSALGLSQKPIYVQALHEAPERSGIDGLDTLETIPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSTAVAEVWLWQVGSWKSVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFTITRTGTGEISYSLHARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVERDSSVRLLMTLPQFVSSVTALSWIGLHDGKNDGLLAVGMENGQIELWSLSYNREDDGSIATPGLAAALVVRIDPFICHASTVNRLAWRKNEEDHSGMQLASCGADNCVRVFDVTVL. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07836 840 Gene3D - 581 683 IPR015943 GO:0005515
Seca8g07836 840 SUPERFAMILY WD40 repeat-like 691 837 IPR036322 GO:0005515
Seca8g07836 840 Gene3D - 162 284 IPR015943 GO:0005515
Seca8g07836 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 270 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 634 673 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 109 152 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 459 498 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 360 399 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 728 772 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 405 444 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 587 631 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 299 350 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 792 836 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 212 261 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 683 722 IPR001680 GO:0005515
Seca8g07836 840 SMART WD40_4 52 102 IPR001680 GO:0005515
Seca8g07836 840 FunFam Elongator acetyltransferase complex subunit 2 369 680 - -
Seca8g07836 840 PRINTS G protein beta WD-40 repeat signature 248 262 IPR020472 -
Seca8g07836 840 PRINTS G protein beta WD-40 repeat signature 709 723 IPR020472 -
Seca8g07836 840 PRINTS G protein beta WD-40 repeat signature 89 103 IPR020472 -
Seca8g07836 840 Gene3D - 290 409 IPR015943 GO:0005515
Seca8g07836 840 Gene3D - 410 526 IPR015943 GO:0005515
Seca8g07836 840 Gene3D - 12 160 IPR015943 GO:0005515
Seca8g07836 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 674 IPR001680 GO:0005515
Seca8g07836 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 443 IPR001680 GO:0005515
Seca8g07836 840 SUPERFAMILY WD40 repeat-like 191 726 IPR036322 GO:0005515
Seca8g07836 840 Gene3D - 684 839 IPR015943 GO:0005515
Seca8g07836 840 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 731 IPR001680 GO:0005515
Seca8g07836 840 SUPERFAMILY WD40 repeat-like 28 331 IPR036322 GO:0005515
Seca8g07836 840 Pfam WD domain, G-beta repeat 306 349 IPR001680 GO:0005515
Seca8g07836 840 Pfam WD domain, G-beta repeat 54 101 IPR001680 GO:0005515
Seca8g07836 840 Pfam WD domain, G-beta repeat 118 151 IPR001680 GO:0005515
Seca8g07836 840 Pfam WD domain, G-beta repeat 220 261 IPR001680 GO:0005515
Seca8g07836 840 Pfam WD domain, G-beta repeat 691 721 IPR001680 GO:0005515
Seca8g07836 840 Pfam WD domain, G-beta repeat 408 443 IPR001680 GO:0005515
Seca8g07836 840 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 690 724 - -
Seca8g07836 840 PANTHER ELONGATOR COMPLEX PROTEIN 2 14 838 IPR037289 GO:0002098|GO:0033588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07836 Seca-Chr8 175819817 175825312 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07836 8 175819817 175825312 Seca8g07836 8 175819817 175825312 ECH