Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07835 ATGGAGGCGCAACCGCAACCTCCAACACCTTCCACTGCCCCGCCACTCTCCTCGGTGGCTCCGCCGCTGCCACCACCACACCTCAACTATCCCGATTCCGTTGATTCCTCCCCACGCTCCCGCAACACCGACTCATGGGACGAGCCTTTCCCTCCTGCCTCCACCAAGCTCCGCCTCATGTGCAGTTACGGCGGCCACATCGTCCCTCGCCCTCACGACAAGTCCCTCTGCTATGTCGGCGGCGATACTCGCATCGTCGTGGTTGAACGCGCCACCTCCCTCTCTGACCTCTCCACGCGCCTCTCCAAAACCTTCCTCAATGGAAGACCCTTCACTCTCAAGTACCAGCTCCCAAACGAAGACCTCGATTCCCTCATCTCTGTTACCACCGATGAAGACCTTGAGAATATGATCGATGAGTACGATCGAACTACCTCAGCCAATTCATCCATCAAACCCTCACGTATTCGCCTCTTTCTCTTCCCTTCAAAACCCGATTCCACTCACTCCATTCCCCCTCAAATCCTCGATACCTCCGCTAAATCCGATGACTGGTTCCTCGATGCCCTAAACGGCGCCGGATTGCTCAACCGAGGGTTCTCTGATTCCGCCTCCGTTAACTGCTTATTAGGTCTCGATGATGACGTTGCAGGGAACAATATCGAGCAAGGTTCCAGGGAGGTTGTGGAAGGTGGTGCTTCTCAGCCTGGATCCTTTGGGAATTGCAAGAATTTGAAGCAGGATGTTCACTCTGTTCCCGATTCGCCTATGCTGGAGACCACTTCCTCTTTCGGTTCTACTTCGTCGTCGCCGTCGCTGGCCAATTTGCCGCCGATTCGGGTTCATGTGGAGGATGGTATGGGTGGCGGTGGTGGGGTTAGGGTTCAGCAGGATCAGAAGATGTTGGGGATTGAGGAACAGTTTGCTCAAATGGGTGTTGGTGTTGGACAGAAACAGCAGCAGGAGGAGGGCTTTGTTATGATGTCTTCGCCGCCCCCTCCTCCGGTGCCGTCAACCCTTTCCGCCACGGCGGTGGGTGTGCCGATCGGGTCCGCGGTGGTTGCCGGTGAATACCAGAACCGGGTTTTCTCCGATGATGAGAGATCGGATCATGGGGTTCCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGCACAGCCTCAGGCACAAGCACAATCACATCCTCCTCAATTTCAACAGAAGTCAAGTGGCGGCGCTGATTTGCCTTCCCCTGATTCAGTTTCAAGCAGTGATAGTAGTCTTTCAAATCCACTGTCACGTCCAAAACCTGTAATGTATCAAGATCAACTTCAGATTCAATCTGGAACCACAAGGGTTCCTAGTAACCCTGTGGATCCGAAACTTAATGTGTCTGATCCACACGGTCGGATCCAGGTGCAGCAACATGTACAGGACCCAGGATATTTATTGCAACAGCAATTTGAACACCAGCAACAGCCTCCCCCTCCTCAACAGCAGCAGCAGTATATACATGGCACACACTTCATTCACCATAACCCTGGAATTCCTACATATTATCCTGTATATCCTTCCCAACAACAGCCCCATCCCCAGGTTTACTATGTGCCTGCAAGACAAGCCCAAGCTTACAACTTGTCTGTGCAGCAGGGTAATATGGGTGAATCTGCCACAGCAATCCCTTCTAGCCGCCCCCAAACTCCACCAAATCCTACTACATTGGTTCAACCATCTGCAGCTTACAACCCCATGAGAAATGCTCCCCTACCTAAAACTGAAATGACAGCAGCTGCTTACAGAACTGCAACTGCAGGAACCCCTCAATTGGTTCAAGTTCCTGCAAATCAGCACCAGCAACAATATGTCACCTACTCCCAGATCCACCATCCATCTCAGTCCATAGCCCCTACTTCTGCTCCCCCTGCTAATTATGCTTATGATTATGTGGATCCTGCTCATGCTCAAATATACTACTCTCAACCTCTGGCACCCACAATGCCTTCACAGTACCAGACCATGACAGCTGCTGCTGTGGTGCTGCCGGAAGTTTCTTCTGCTCAGCATCCCTCAGATGGCATGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2097 0.5222 MEAQPQPPTPSTAPPLSSVAPPLPPPHLNYPDSVDSSPRSRNTDSWDEPFPPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERATSLSDLSTRLSKTFLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTTSANSSIKPSRIRLFLFPSKPDSTHSIPPQILDTSAKSDDWFLDALNGAGLLNRGFSDSASVNCLLGLDDDVAGNNIEQGSREVVEGGASQPGSFGNCKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVEDGMGGGGGVRVQQDQKMLGIEEQFAQMGVGVGQKQQQEEGFVMMSSPPPPPVPSTLSATAVGVPIGSAVVAGEYQNRVFSDDERSDHGVPVGYRKPPTPQPQAQPQAQAQSHPPQFQQKSSGGADLPSPDSVSSSDSSLSNPLSRPKPVMYQDQLQIQSGTTRVPSNPVDPKLNVSDPHGRIQVQQHVQDPGYLLQQQFEHQQQPPPPQQQQQYIHGTHFIHHNPGIPTYYPVYPSQQQPHPQVYYVPARQAQAYNLSVQQGNMGESATAIPSSRPQTPPNPTTLVQPSAAYNPMRNAPLPKTEMTAAAYRTATAGTPQLVQVPANQHQQQYVTYSQIHHPSQSIAPTSAPPANYAYDYVDPAHAQIYYSQPLAPTMPSQYQTMTAAAVVLPEVSSAQHPSDGMKQQIRTSQPL. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07835 698 MobiDBLite consensus disorder prediction 254 275 - -
Seca8g07835 698 Pfam PB1 domain 72 162 IPR000270 GO:0005515
Seca8g07835 698 MobiDBLite consensus disorder prediction 33 49 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 549 573 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 362 434 - -
Seca8g07835 698 SUPERFAMILY CAD & PB1 domains 72 171 - -
Seca8g07835 698 Gene3D - 76 161 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 388 434 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 1 51 - -
Seca8g07835 698 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 76 163 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 1 31 - -
Seca8g07835 698 ProSiteProfiles PB1 domain profile. 56 163 IPR000270 GO:0005515
Seca8g07835 698 PANTHER OS05G0427100 PROTEIN-RELATED 29 526 - -
Seca8g07835 698 SMART PB1_new 71 163 IPR000270 GO:0005515
Seca8g07835 698 CDD PB1_UP2 60 161 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 230 275 - -
Seca8g07835 698 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07835 Seca-Chr8 175815135 175818881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07835 53 264 MAP Kinase Kinase Kinase AT1G79570 32.889 9.66e-25 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07835 8 175815135 175818881 Seca8g07835 8 175815135 175818881 ECH
Seca8g07835 8 175815135 175818881 Seca10g04842 10 111733296 111736107 ECH