Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07834 ATGGCGTGGCGGGGTGTGTTATCTTTTGGAAGATTTTGGGCATCGCTTCAGGGAGGGATGAGACAGGTTGATCCTGCTGCTCATACTATCAAGTCCCATGGAGCCACACTTGCAAGGAATCACTTTCGTGATTGGCTTATATTGGTGCTTCTCATTGTAATAGAGGTTGTCCTCTTTGTCATTCATCCATTTTACCGCTTTGTGGGAAGGGACATGATGGAAGACCTTAAATATCCTATGAAAGAAAACACAGTGCCTGTATGGGCTGTTCCTCTATATGCGGTTCTGTTGCCAATGGCTGTTTTCCTTCTCTTTTATATGCGTAGGAGAGATGTTTATGATTTGCACCACAGTGTTCTAGGTCTCCTATTTGCTGTTCTGATAACTGGGGTCTTGACTGATGCAATAAAAAATGCAGTTGGCCGGCCTCGGCCAGACTTCTTTTGGCGTTGCTTTCCCGATGGAGTCGAGGTTTATGATAAATGGGGAGGTGTGGTATGTCATGGCAAGGATAGTGATATAAAAGAAGGACACAAGAGGTCCTTTGCAGGTCTAGGCTTTCTCTCTTTGTACCTATCCGGGAAGATTAGAGCGTTTGATCGTCAAGGGCACGTGGCAAAATTATGCATTGTGTTTTTTCCTCTGCTTGTTGCTTGTCTAGTTGGAATTTCTCGAGTGGATGACTATTGGCATCACTGGCAAGATGTGTTTGCTGGAGGCCTTCTAGGGCTTGTTGTAGCAACCTTTTGCTATATGCAGTTCTTCCCTCCTCCCTATAGCGATGATGGATGGGGTCCATATGCATATTTCCGGGCAATGGAGGAATCTCGAGCCAATTCAAACATGAATCGGGATTCACCCGTTGTGCAGACCATGGGGGATCGGGTAATGAATCAAGTACCAAGGAGAACTGGTGATGCATTATCCCCTTTCTCTTATCTCAGCCCAACCTTGGAAGCCATGGAGCTGGGACACAAATCTCATGGAGCTAGAGTTGCAAGGATACATATGCATGACTGGCTGATTCTTTTGCTTCTTGTTATCATTGATGCTGTATTGAATATAATAGAGCCATTTCACCGTTTTGTTGGAGACGGGATGCTGACGGACCTGAGATACCCTTTGAAAGATAATACTATTCCCTTTTGGGCTGTTCCAATAATAGCAATATTGTTGCCACTTGCTGTCATTCTCGTTTACTATTTCATTCGAAAGGATGTTTATGACTTCCACCATGCTATATTGGGCCTTCTATTTTCTGTACTCATTACTGCGGTGATAACCGACGCAATCAAAGATGGTGTTGGACGGCCACGGCCAGATTTCTTCTGGCGTTGTTTCCCTGATGGAAAAGGAGTGTTTGATCCAGTAACAGGTGGTGTTAGGTGTACTGGAGATAAGGGTGTTATTAAGGAAGGGCACAAAAGTTTCCCGAGGTCCTTTGCTGGTCTTGTTTTTCTTGCTTGGTATCTATCTGGAAAAATTAGGGTATTTGACCGTAGGGGCCACATTGCAAAACTGTGTCTTGTTTTCTTACCAATCCTCATGGCAGCTTTGGTTGCTGTCTCTCGTGTTGATGATTATTGGCATCACTGGCAAGATGTGTTTGCTGGAGGTCTTATAGGGACTGCAGTTGCTTCCTTTTGTTACTTACAATTCTTTCCACCTCCATATGACATAGATGGTTGGGGACCTCATGCATATTTTCGGATGTTAGCTGAATCCCGTAATGGTGCTCAGCCTCCTTCCGTGAACAATGACATTCATCTTGCGCAATCTGCGGAGCTTCAGGCTGTATCTTTGTATATCCCACCTCAACATGATGGAGATACACGAGGCAATAGCTGGGATTCAAGCCCCATGTTAGCAGTGCTCACTGGTATCACTACCCTTTACAACACAGGGTTGAACTATGGTGGCCCTGTTTCCATGCAATATGGGTGGTTTATAGCTTCTGGTTTCACTATGATTGTTGCACTGTCAATGGGTGAAATTTGTTCATCTTATCCAGCCTCTGGTGGTCTTTACTATTGGAGTGCCAAGCTTGCTGGCCCGGAATGGGCACCCTTTGCCTCCTGGGTTACCGGGTGGTATTGTACCAAACCCCTTTTTCTCCATTGCATTTTTTATATTGTTAGCAATTTGCATTGA 2151 0.4486 MAWRGVLSFGRFWASLQGGMRQVDPAAHTIKSHGATLARNHFRDWLILVLLIVIEVVLFVIHPFYRFVGRDMMEDLKYPMKENTVPVWAVPLYAVLLPMAVFLLFYMRRRDVYDLHHSVLGLLFAVLITGVLTDAIKNAVGRPRPDFFWRCFPDGVEVYDKWGGVVCHGKDSDIKEGHKRSFAGLGFLSLYLSGKIRAFDRQGHVAKLCIVFFPLLVACLVGISRVDDYWHHWQDVFAGGLLGLVVATFCYMQFFPPPYSDDGWGPYAYFRAMEESRANSNMNRDSPVVQTMGDRVMNQVPRRTGDALSPFSYLSPTLEAMELGHKSHGARVARIHMHDWLILLLLVIIDAVLNIIEPFHRFVGDGMLTDLRYPLKDNTIPFWAVPIIAILLPLAVILVYYFIRKDVYDFHHAILGLLFSVLITAVITDAIKDGVGRPRPDFFWRCFPDGKGVFDPVTGGVRCTGDKGVIKEGHKSFPRSFAGLVFLAWYLSGKIRVFDRRGHIAKLCLVFLPILMAALVAVSRVDDYWHHWQDVFAGGLIGTAVASFCYLQFFPPPYDIDGWGPHAYFRMLAESRNGAQPPSVNNDIHLAQSAELQAVSLYIPPQHDGDTRGNSWDSSPMLAVLTGITTLYNTGLNYGGPVSMQYGWFIASGFTMIVALSMGEICSSYPASGGLYYWSAKLAGPEWAPFASWVTGWYCTKPLFLHCIFYIVSNLH. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07834 716 FunFam Lipid phosphate phosphatase 2 39 262 - -
Seca8g07834 716 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 335 558 IPR036938 -
Seca8g07834 716 CDD PAP2_containing_1_like 369 553 - -
Seca8g07834 716 PANTHER LIPID PHOSPHATE PHOSPHATASE 326 586 IPR043216 GO:0006644
Seca8g07834 716 Gene3D Amino acid/polyamine transporter I 621 713 - -
Seca8g07834 716 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 41 165 - -
Seca8g07834 716 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 180 262 - -
Seca8g07834 716 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 334 559 - -
Seca8g07834 716 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 41 258 IPR036938 -
Seca8g07834 716 Pfam Amino acid permease 626 702 IPR002293 GO:0016020|GO:0022857|GO:0055085
Seca8g07834 716 FunFam Lipid phosphate phosphatase 2 334 561 - -
Seca8g07834 716 Pfam PAP2 superfamily 119 254 IPR000326 -
Seca8g07834 716 Pfam PAP2 superfamily 414 554 IPR000326 -
Seca8g07834 716 SMART acid_phosph_2 412 550 IPR000326 -
Seca8g07834 716 SMART acid_phosph_2 119 251 IPR000326 -
Seca8g07834 716 CDD PAP2_containing_1_like 76 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07834 Seca-Chr8 175774536 175792912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07834 326 599 Lipid Metabolism Gene Families AT1G15080 74.194 3.26e-138 406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07834 8 175774536 175792912 Seca8g07834 8 175774536 175792912 ECH