Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07764 ATGGCAATCTTCCATCATCATCACAATGACCAATTAGAACATAATGAAAATGTTTCATCTGTCCTTGATGCTCTTTACTGTGATGAAGGAAAATGGGAAGAGGAGGAAGAAGAAGGTGACTTATCTGAAGCAAGTGATGTGACAACTAACAATATTGATGATGGGGTGCACCAAGACACTACAAGTTCTTCTCTTTCCCCTCTTCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAAGAACTTAACTCTCTTTTCTCCAAAGAGAAGATTCAACAACAAACCTATCACGATCTGAATTTAGACCCTTCTCTTTCTCAACCTCGTCATGAGGCAGTTGAATGGATGCTTAAAGTCAATGCTCATTATGGATTCTCTGCTCTCACTGCAACACTTGCTGTTACTTACCTGGATACATTCCTTTCAAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCCTAGACCTTCAAGTGCAAGACGCCAAATATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGTTGCTGGTTCTCTCCACCCTCAAGTGGAAGATGCATCCTGTGACCCCACTCTCCTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACCCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTATCTGTGCTTATAGTAGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTATTGGCCACTGCAACAATGCTGCATGTTATAGATCAGATTGAGAAGAGTGATGGGGTGGAATACAAAAATCAGCTTCTGGGTGTTCTCAAAATTAACAAGGAGAAAGTAGATGAATGTTATAATGCAATTCTCCAACTCTCAAATGGCAATAATTATGGTAATAACAACCCTAGTAAGCGCAAGTATGAGCAAATTCCTGGCAGCCCAAGTGGCGTAATTGATGCTGCTTTTAGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCATCTCCAGAGCCTCTGTTCAAGAAGAGCAGAAACCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGGCAGCTCCCCCTAA 1161 0.4212 MAIFHHHHNDQLEHNENVSSVLDALYCDEGKWEEEEEEGDLSEASDVTTNNIDDGVHQDTTSSSLSPLLLLEQDLFWEDEELNSLFSKEKIQQQTYHDLNLDPSLSQPRHEAVEWMLKVNAHYGFSALTATLAVTYLDTFLSSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDAKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLIVDSRFVGCLPSVLATATMLHVIDQIEKSDGVEYKNQLLGVLKINKEKVDECYNAILQLSNGNNYGNNNPSKRKYEQIPGSPSGVIDAAFSSDGSNDSWAVGSSLYSSPEPLFKKSRNQGQQMKLSPLNRVIVGIVGSSP. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07764 386 SMART Cyclin_C_2 211 340 IPR004367 -
Seca8g07764 386 FunFam D3-type cyclin 102 209 - -
Seca8g07764 386 MobiDBLite consensus disorder prediction 32 61 - -
Seca8g07764 386 SUPERFAMILY Cyclin-like 76 209 IPR036915 -
Seca8g07764 386 SMART cyclin_7 114 202 IPR013763 -
Seca8g07764 386 CDD CYCLIN_AtCycD-like_rpt1 109 206 - -
Seca8g07764 386 Gene3D - 105 209 - -
Seca8g07764 386 MobiDBLite consensus disorder prediction 44 61 - -
Seca8g07764 386 Pfam Cyclin, C-terminal domain 211 323 IPR004367 -
Seca8g07764 386 SUPERFAMILY Cyclin-like 212 322 IPR036915 -
Seca8g07764 386 Pfam Cyclin, N-terminal domain 84 208 IPR006671 -
Seca8g07764 386 CDD CYCLIN_AtCycD-like_rpt2 211 302 - -
Seca8g07764 386 FunFam CYCLIN D32 210 300 - -
Seca8g07764 386 Gene3D - 210 302 - -
Seca8g07764 386 PANTHER CYCLINS 79 314 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07764 Seca-Chr8 174896434 174899264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07764 1 305 Core Cell Cycle Gene Families AT4G34160 57.705 5.55e-113 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07764 8 174896434 174899264 Seca8g07764 8 174896434 174899264 ECH
Seca4g01431 4 23082903 23084940 Seca8g07764 8 174896434 174899264 ECH
Seca12g02374 12 33797319 33799501 Seca8g07764 8 174896434 174899264 PCT