Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07022 ATGACGGACATCACAGACGATATTGCTGAAGAAATATCCTTTCAGAGCTTCGATGATGACTGCAGGTTACTCGGCAGTCTTCTCAACGATATTCTCCACCGTGAGGTTGGCACCAACTTCGTTGATAAACTCGAAAGGATTCGAGTCCTTGCTCAGAGTGCTTGTAATATGAGGCAGGCAGGTATTGTGAACATGGCAGAGCTGCTTGAGAAGCAGTTGGCTTCAGAGTTATCAAAGATGACACTAGAAGATGCTCTAACTCTTGCTCGTGCCTTCAGCCATTATCTTAATTTGATGGGTATAGCTGAAACCCATCATAGGGTTCGTAAACGAGGGAATTTGGTACAAATTGCTAAATCTTGTGATGATGTATTTAACCAGCTGGTGCAGGGTGGAGTTTCCCCAGATGACCTTTATAACACAGTCTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCTCATCCCACACAAATTAATCGCCGTACTTTACAATACAAACACATTAGAATTGCTCATCTTTTGGATTATAATGATCGTCCTGATCTTAGCGTTGAAGATCGAGAAATGGTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGTCAAAAACCCACTCCAGTTGATGAAGCTAGAGCTGGTTTGAATATTGTGGAGCAGTCACTCTGGAAAGCTGTTCCCCATTATTTACGTCGAGTCAGCAATGCTTTAAAGAAGCATACAGGAAGGCCACTCCCATTGACTTGCACTCCCATAAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAACGTGACAGCAAAGGTCACAAAAGATGTTTCGCTTCTATCTAGATGGATGGCGATTGACCTCTATATTCGGGAAGTGGATAGCCTCAGATTTGAACTATCCATGAACCAATGCAGCGATAGGTTGTCAAGACTGGCACATGAAATTCTAGAAGAAGCTAAGCATGAAAATCGCCGTGAGAATTGGAATCAATCTGTGAACAGAAATCAGTCACTCCCAACACAACTTCCAGCTAGAGCTCATTTACCCTCTTTTGCTGAAAATGGTGAAGCCCAGCATCCCAGACTAGACATTCCGGGACCTGATTACATGCAACTCAATCACAAGGATGGTGGGGTTTCTTCAAATTCAACAACATTCAAAAGTAGCAGTCCCAATATTCAATTATCACAAACAAGTTCAGCAAATTCCAGTGCTTCTTCAGCTGCAATTTCATCCTCTTCTTTCAACTCTACTCAACTACTTGGTCAGAGGAAAATGGTTGCAGAATCCCAGACAGGAAGGTCCAGTTTTCAGAAGCTTTTGGAGCCACAGCTCCCTCAACTTCCTGGAATTGCTCCTTATAGAGTTGTCCTAGGGAATGTAAAGAATAAGCTTGAGAGAAGTCGTAGACGGCTAGAACTTCTTCTTGAGGATGTTCCATGTGACTATGATCCTTTGGATTACTATGAGACGACTGATCAGCTTCTGGAACCTCTGCTTCTTTGTTATGAATCTCTGCAATCATGTGGATCTGGGGTGCTAGCTGATGGTCGTCTTGCTGATCTGATTCGTAGAGTTGCTACCTTTGGAATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCTGGGAGACATGCAGAAACACTTGATGCAATCACAAGTTATTTGGATATGGGTACTTACAGTGAATGGGATGAAGAAAAGAAACTGGACTTCTTAACAAGAGAGCTAAAAGGGAAAAGGCCACTAGTTCCTGTTAGTATAGAGGTTCCTTCTGATGTCAAAGAAGTCTTAGATACATTCCGAATTGCTGCTGAACTAGGGAGTGATTCACTTGGAGCCTATGTGATCTCGATGGCATCAAATGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAGGATGCATGGCTTGCTGCAATTGGGGAGTCAGGAAGAGCAGGTCCTGGTGGAACGTACGTATTGCAGGACTAG 1995 0.4331 MTDITDDIAEEISFQSFDDDCRLLGSLLNDILHREVGTNFVDKLERIRVLAQSACNMRQAGIVNMAELLEKQLASELSKMTLEDALTLARAFSHYLNLMGIAETHHRVRKRGNLVQIAKSCDDVFNQLVQGGVSPDDLYNTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRPDLSVEDREMVIEDLVREITSIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGRPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYIREVDSLRFELSMNQCSDRLSRLAHEILEEAKHENRRENWNQSVNRNQSLPTQLPARAHLPSFAENGEAQHPRLDIPGPDYMQLNHKDGGVSSNSTTFKSSSPNIQLSQTSSANSSASSAAISSSSFNSTQLLGQRKMVAESQTGRSSFQKLLEPQLPQLPGIAPYRVVLGNVKNKLERSRRRLELLLEDVPCDYDPLDYYETTDQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAETLDAITSYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVSIEVPSDVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLAVELLQKDAWLAAIGESGRAGPGGTYVLQD. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07022 664 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Seca8g07022 664 Pfam Phosphoenolpyruvate carboxylase 449 646 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca8g07022 664 Pfam Phosphoenolpyruvate carboxylase 19 335 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca8g07022 664 Coils Coil 465 485 - -
Seca8g07022 664 Gene3D Phosphoenolpyruvate/pyruvate domain 289 369 - -
Seca8g07022 664 Gene3D Phosphoenolpyruvate/pyruvate domain 395 538 - -
Seca8g07022 664 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 646 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca8g07022 664 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 645 IPR015813 GO:0003824
Seca8g07022 664 MobiDBLite consensus disorder prediction 382 407 - -
Seca8g07022 664 MobiDBLite consensus disorder prediction 363 407 - -
Seca8g07022 664 FunFam Phosphoenolpyruvate carboxylase 4 418 538 - -
Seca8g07022 664 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca8g07022 664 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Seca8g07022 664 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07022 Seca-Chr8 165894203 165903373 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07022 8 165894203 165903373 Seca8g07022 8 165894203 165903373 ECH