Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07011 ATGATACAGGAAGATCATCAAGGACAGTGTTCTTCTCAAGCCATCAACAACTTTCAAACCTATCAAGAGCAGTTTCTCCTTCAACAACAGATGACACAACAAAACGGTGGTGATTTCTATGGTGGAGGAGGAGGAAGAGTTGGATTGAATATGTTCCCTTCTAATAGTGAGGTTTTGCAACCATGGTGTATGCCTCATCATCAGGTTCACCCTTTCAACCCTGCAGTGAGAGAGCATGATCCATATGCAAGTTTGTTCAATAGAAGGGTTCCTTCTCTTCAGTTTGCATATGAGGGTCCATCATCTTCTGATCTGAGGATCATATCAGATACCCTTGGAGTTGCAGGTTCATCAGCACCTTTTGGTCTCCAAGCTGAGCTGGGAAAGATGACTGCTCAAGAAATCATGGAAGCTAAGGCTCTTGCAGCATCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCATCTTGCTAAGCTCCGCAGCTTGTTGCCCAACACTACCAAAACAGATAAAGCATCATTGCTAGCAGAAGTGATTCAACATGTGAAGGAATTGAAGCGACAAACTTCATTGATAGCAGAAACGAGTCCAGTTCCTACAGAGGCTGATGAGTTAACAGTGGATGCAGCTGATGAAGATGGTAAGTTTATCATCAAAGCCTCACTTTGCTGTGAAGATAGGTCAGATCTCTTACCTGAACTCATCAAGGCATTGAAAGCATTAAGGTTAAGAACCCTCAAAGCTGAGATCACAACGCTTGGTGGTCGTGTCAAGAATGTGTTGTTCATTACTGGGGATAATGAAGATTCAAGTAGCAATGATGAGGACCATAGTCACCACCAACAGCAATATTGTATTAGTTCAATACAAGAAGCACTTAAGGCAGTGATGGAGAAGAGTGTTGGGGATGAGTCTGCAGCTTCTGGAAATGTCAAGAGACAAAGGACCAATATAATTTCAATATCCTAG 987 0.4276 MIQEDHQGQCSSQAINNFQTYQEQFLLQQQMTQQNGGDFYGGGGGRVGLNMFPSNSEVLQPWCMPHHQVHPFNPAVREHDPYASLFNRRVPSLQFAYEGPSSSDLRIISDTLGVAGSSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAADEDGKFIIKASLCCEDRSDLLPELIKALKALRLRTLKAEITTLGGRVKNVLFITGDNEDSSSNDEDHSHHQQQYCISSIQEALKAVMEKSVGDESAASGNVKRQRTNIISIS. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07011 328 CDD bHLH_AtAIG1_like 137 215 - -
Seca8g07011 328 Gene3D - 137 198 IPR036638 GO:0046983
Seca8g07011 328 PANTHER TRANSCRIPTION FACTOR BHLH30 31 323 IPR045847 GO:0003700|GO:0006355
Seca8g07011 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Seca8g07011 328 SMART finulus 148 197 IPR011598 GO:0046983
Seca8g07011 328 FunFam transcription factor bHLH30 137 200 - -
Seca8g07011 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 198 IPR036638 GO:0046983
Seca8g07011 328 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07011 Seca-Chr8 165742285 165745467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07011 11 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.986 3.98e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g07011 HLH 2.2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07011 8 165742285 165745467 Seca8g07011 8 165742285 165745467 ECH