LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g07003	ATGGATGGAGGCAGTTGCACAGACGAAACCACCACAAGCAGCGACTCCCTTTCCGTATCCCTTACTCCGGCGAAGCTATCTCCACCACCACCGAACACTCTCAGCCGCTTAGGCAGCGGCACCAGCGCCATCGTGGATCCCGACAGTGGCGGCGGCTCCGGCGAGGCCGAATCCAGGAAACTTCCGTCGTCGAAATACAAAGGCGTGGTGCCCCAACCTAACGGCCGTTGGGGAGCTCAGATATACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGACGAAGATGAAGCTGCCAGAGCCTACGACATCGCCGCGCAGAGGTTCCGCGGCAAAGATGCCGTCACCAACTTCAAGCCCCTCACCGACGACGCCGAAATCGAGTTCCTCAACTCGCATTCCAAATCTGAGATCGTCGACATGCTCCGGAAGCACACTTACGACGACGAGCTCCAGCAGAGCAAGCGCGGCGGCAAGTGCGGCGGAAGGCAGCGGCGCAACGGCGAAACTGCCGCGGCAGCGTCGTTTGAATCTGGTGGCGCGTGCGATGCGAAGGCGCGTGAGCAGTTGTTTGAGAAAACGGTTACTCCGAGTGACGTAGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCACTTTCCGTTAGGCGGCGCCGGCGACGGAATCTCGCCGTGCGCGGTGGCGGCGAAGGGTGTGCTTTTGAATTTCGAAGACGTTGGAGGGAAAGTTTGGCGGTTTCGTTACTCGTATTGGAATAGTAGCCAGAGCTACGTGTTAACGAAGGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAGGGCCGGTGATGCGGTTCGGTTCTTCAGGTCAACCGGACCGGACCGGCAGCTCTACATAGATTGCAAGGCCAGGAGTAATGTAAACATGGTGGTTTGTTTATTCCGGTCGGACCGGTGGTTGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTCAACCTTTTGA	996	0.5823	MDGGSCTDETTTSSDSLSVSLTPAKLSPPPPNTLSRLGSGTSAIVDPDSGGGSGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNDEDEAARAYDIAAQRFRGKDAVTNFKPLTDDAEIEFLNSHSKSEIVDMLRKHTYDDELQQSKRGGKCGGRQRRNGETAAAASFESGGACDAKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLGGAGDGISPCAVAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVRFFRSTGPDRQLYIDCKARSNVNMVVCLFRSDRWLSRFRWFGFLGSTF.	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g07003	331	SMART	rav1_2	65	126	IPR001471	GO:0003700\|GO:0006355
	Seca8g07003	331	Pfam	AP2 domain	64	112	IPR001471	GO:0003700\|GO:0006355
	Seca8g07003	331	CDD	B3_DNA	191	313	IPR003340	GO:0003677
	Seca8g07003	331	FunFam	AP2 domain-containing protein RAP2.8	64	121	-	-
	Seca8g07003	331	CDD	AP2	64	119	IPR001471	GO:0003700\|GO:0006355
	Seca8g07003	331	MobiDBLite	consensus disorder prediction	150	174	-	-
	Seca8g07003	331	SUPERFAMILY	DNA-binding pseudobarrel domain	190	302	IPR015300	-
	Seca8g07003	331	Gene3D	AP2/ERF domain	64	121	IPR036955	GO:0003700\|GO:0006355
	Seca8g07003	331	SMART	B3_2	192	302	IPR003340	GO:0003677
	Seca8g07003	331	PRINTS	Ethylene responsive element binding protein signature	66	77	IPR001471	GO:0003700\|GO:0006355
	Seca8g07003	331	PRINTS	Ethylene responsive element binding protein signature	86	102	IPR001471	GO:0003700\|GO:0006355
	Seca8g07003	331	ProSiteProfiles	AP2/ERF domain profile.	65	120	IPR001471	GO:0003700\|GO:0006355
	Seca8g07003	331	Gene3D	-	181	308	IPR015300	-
	Seca8g07003	331	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	60	304	IPR044800	GO:0003700
	Seca8g07003	331	Pfam	B3 DNA binding domain	192	293	IPR003340	GO:0003677
	Seca8g07003	331	SUPERFAMILY	DNA-binding domain	64	120	IPR016177	GO:0003677
	Seca8g07003	331	ProSiteProfiles	B3 DNA-binding domain profile.	192	315	IPR003340	GO:0003677
	Seca8g07003	331	MobiDBLite	consensus disorder prediction	1	23	-	-
	Seca8g07003	331	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g07003	Seca-Chr8	165623059	165624573	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g07003	5	312	B3 DNA Binding Superfamily	AT1G25560	65.938	5.73e-134	384

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-RAV	Seca8g07003		B3	4.4e-26	CL0405

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca8g07003	8	165623059	165624573	Seca8g07003	8	165623059	165624573	ECH