Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07001 ATGTATAATTTCACTGAGAAAATGCAGCGCCTGAAGATAGGGTTCCCTGAATACATCCAAGCATTGGAAGAAGAACGCCGTAAGATTCAGGTGTTCCCTAAAGAGCTTCCTCTTTCATTGGAGCTCATCACTCAAGCCATTGAAGCTTGTAAGCAGCAATTGTCTGGTACAACGACTGAGTATAATTTGAATGGCCAATCTGAGTGTTCAGAGCAGACAACATCAACGGAAGGTCCTGTTTTGGAGGAGTTCATTCCAATCAAGAAAAGGGCTTCACCTTATTGTGATGAAGATGATGAAGATGAGCAACATTCTCATAAGCAAAAGATTTCAAAGAACAGTGATAAAAGGAAATCGGATTGGCTTAGATCTGTTCAGTTATGGAATCCAGATCCCTCAGCAGAGGAGGATATGAATAGGAAAGTGCCTTTGAAGGAATTGAAGAGAAGTGGAAATGGCGGTGGTGCTTTTCAACCATTCCATAAAGAAGAAAAAGCTGACAAGACAAGTGAATCGTTGAGTAAAGAACCCTCTTTGACTCAGGTAGCTACTGCAAGTTCTACGGCGGCGACAGTAACCAGCAACAATGCTGGAAGCAGCAAAAAAGAGGAGAAAGATGGGCAGAGAAAGCAGCGTAGGTGCTGGTCACAGGACCTGCATAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGGGGTCCAGATTCTGCCACACCAAAGCAAATCAGAGAGGTAATGAATGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCACACTAGAAGACCAACTCCAACAGTCCATGACAATGCCAATTCACAAACAACACCTTTTGTCCTTGTAGGGAACATTTTTGTTCAACCACCAGAATATGCAGCTGTTGCTACCTCATCAGGGGAACTAACCAAGATTGTGGCACCTGCTGGAATTTATGCACCGGTGGCCACTCATCCTGCAGCTGTTTCACACACACCACCTGCTTCAATTAAGAAGCCAGAGTTTAAGAAAGTGGAGCTGTTTGAACATTCAAACTCAGAAGAAAGGGCTAATAATCACAGTGAAGGGGCTACTCATTCAAACTCCCCTTCATCTTCATCCTCCACGCATACCACTACTAATTACCCTGGCCATTGA 1152 0.4401 MYNFTEKMQRLKIGFPEYIQALEEERRKIQVFPKELPLSLELITQAIEACKQQLSGTTTEYNLNGQSECSEQTTSTEGPVLEEFIPIKKRASPYCDEDDEDEQHSHKQKISKNSDKRKSDWLRSVQLWNPDPSAEEDMNRKVPLKELKRSGNGGGAFQPFHKEEKADKTSESLSKEPSLTQVATASSTAATVTSNNAGSSKKEEKDGQRKQRRCWSQDLHKRFLHALQQLGGPDSATPKQIREVMNVDGLTNDEVKSHLQKYRLHTRRPTPTVHDNANSQTTPFVLVGNIFVQPPEYAAVATSSGELTKIVAPAGIYAPVATHPAAVSHTPPASIKKPEFKKVELFEHSNSEERANNHSEGATHSNSPSSSSSTHTTTNYPGH. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07001 383 MobiDBLite consensus disorder prediction 130 213 - -
Seca8g07001 383 MobiDBLite consensus disorder prediction 94 118 - -
Seca8g07001 383 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Seca8g07001 383 Pfam Myb-like DNA-binding domain 212 263 IPR001005 -
Seca8g07001 383 Gene3D - 209 267 - -
Seca8g07001 383 FunFam Myb family transcription factor 209 267 - -
Seca8g07001 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 349 IPR044787 GO:0003700|GO:0006355
Seca8g07001 383 MobiDBLite consensus disorder prediction 326 383 - -
Seca8g07001 383 MobiDBLite consensus disorder prediction 360 383 - -
Seca8g07001 383 MobiDBLite consensus disorder prediction 173 198 - -
Seca8g07001 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Seca8g07001 383 MobiDBLite consensus disorder prediction 199 213 - -
Seca8g07001 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Seca8g07001 383 MobiDBLite consensus disorder prediction 335 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07001 Seca-Chr8 165591707 165594148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07001 2 337 G2-like Transcription Factor Family AT1G68670 45.251 2.21e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g07001 Myb_DNA-binding 2.2e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07001 8 165591707 165594148 Seca8g07001 8 165591707 165594148 ECH