Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06127 ATGGACACAGCTCAGTGGCCACAGGAGATTGTGGTGAAACCAATAGAAGATATAGTGGTGACAACAAATACATGTCCAAAGCCTGCATCTGCAGCAGTTGCTACTACTTTGGAGAGAAAGCCAAGGCCACAGAAAGAACAAGCTCTTAATTGTCCAAGGTGTCATTCAATCAACACCAAATTCTGTTACTACAACAACTACAGCCTCACACAGCCTAGATATTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCAGAAACATCCCTGTAGGAGGTGGTTCAAGGAAGAACAAGAGATCTTCTGTTTCCTCTTGTTCCACACCAGTACCTCCAACCAAGAAGCTCCCTGATCTGATCACTCCTCCACCAAGTTTGTCACAAAATTGCACTCAAAACCCTAAGATCCATGATGGCCAAGATCTAAATTTGGCTTTCCCAACCACAACCACAACCACAAGAGATTTTAGAAATAATATCTCTGAAATGGTTCAACAAAATAACAACACCATGTCTGCTTCAGCTTCTTCCTCTTCTTCAATAACTACTACTGCTACCACTACCACCACTACTCAACTCTCAGCATTGGAGCTTCTTACTGGGATCAGTTCAAGGGGTTTACATTCTTTCATGCCTTTACCAGTTCCAGCTGATCCTAATTCTGTTTACACATGTGGTTTTCCCCTGCAAGATTTTAAGCCAACCCTGAATTTCACTTTAGATGGGATTGGAAGTGGGTATCCAACCCTTCAGGGTGTTCAAGAAACAAATACTGGGAGGCTTTTGTTTCCATTTGAGGATTTAAAACAGGTGTCTAGCACCACCACAACAATGGATCAGAGTAATAAGGACCAACATCATGGTGATTCAACTGGGTATTGGACTGGAATGTTAGGAGGAGGATCATGGTTTAATTTGAGGTGTCAGTTGCAGCAAGAATCATCAAAGCAGAGTGATGAAGGAAGTTATTTACTATAG 987 0.4225 MDTAQWPQEIVVKPIEDIVVTTNTCPKPASAAVATTLERKPRPQKEQALNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSVSSCSTPVPPTKKLPDLITPPPSLSQNCTQNPKIHDGQDLNLAFPTTTTTTRDFRNNISEMVQQNNNTMSASASSSSSITTTATTTTTTQLSALELLTGISSRGLHSFMPLPVPADPNSVYTCGFPLQDFKPTLNFTLDGIGSGYPTLQGVQETNTGRLLFPFEDLKQVSSTTTTMDQSNKDQHHGDSTGYWTGMLGGGSWFNLRCQLQQESSKQSDEGSYLL. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06127 328 MobiDBLite consensus disorder prediction 90 146 - -
Seca8g06127 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 191 IPR045174 GO:0003700|GO:0006355
Seca8g06127 328 MobiDBLite consensus disorder prediction 98 114 - -
Seca8g06127 328 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Seca8g06127 328 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Seca8g06127 328 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Seca8g06127 328 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06127 Seca-Chr8 155197938 155201085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06127 1 306 C2C2-Dof Transcription Factor Family AT4G24060 46.000 1.13e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca8g06127 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06127 - - pvu:PHAVU_001G080800g 406.757