Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05061 ATGGATAGTAGTAGTAGTGGGTGGAAGGCTAATGTTGAGATATCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCTCGCTATTTTTGCAAAGGATGCAGAAGGTACTGGACCAAAGGTGGATCTCTCCGCAATGTCCCTGTTGGTGGTGGCTGCAGGAAAAATAGAAGAGGTAATCATAATAAGACCTTAAGACAATCCATTGATGGTCTCACTTTCAAAAATTCACCTTGTGCTGATGCTACAAATCATCATAACCCCTCAATTGCCCATCCTACTAGGAAGACTAGTAGTACTAATTCCTCCTCTGATGGACCCAATATTGATCTTGCACTTGTTTATGCAAATTTCCTAAATCAAAAGCCAGAGTCTGGAACAGGGGTGGTTGAGAATCAAGATCAGGTTCAAAATGTTTTTGATCCTTCTCTGGAAAATTCTAATACAGAGCAGGTTGGTCCAAGTACTTTGCCACAAGAACTTGGTCTTACTGGGTGTTTGTTGAATCTTCCTGAACAACAACCTTCCACAGAGTCCAATTTTAGTGAGGGTAACAACCAAATGTACTATAGCGAGTTCAACTCTATGCAGAGCCTTCAAAAAGATAGGATTGAGCAATGTAGTAATTTTGAGCTGCCACCTTTGCCAGGTGAAGAGGAAACCTCACATGATCATGTGATGTGGTCAAATTCTGAGATGATGATAAATCACCATCCATTTCATCAAGTCAGCCAAGCGCCAATTGTTGGAGGTGAAGTTCATGATGATGCAGACTTGTTAATCGGTAATTGGAGCCCCTTTGATTTGCCAAGGGATGCTTCTTTTTCCAGACCATGA 873 0.4147 MDSSSSGWKANVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNHNKTLRQSIDGLTFKNSPCADATNHHNPSIAHPTRKTSSTNSSSDGPNIDLALVYANFLNQKPESGTGVVENQDQVQNVFDPSLENSNTEQVGPSTLPQELGLTGCLLNLPEQQPSTESNFSEGNNQMYYSEFNSMQSLQKDRIEQCSNFELPPLPGEEETSHDHVMWSNSEMMINHHPFHQVSQAPIVGGEVHDDADLLIGNWSPFDLPRDASFSRP. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05061 290 ProSitePatterns Zinc finger Dof-type signature. 18 54 IPR003851 GO:0003677|GO:0006355
Seca8g05061 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 197 IPR045174 GO:0003700|GO:0006355
Seca8g05061 290 Pfam Dof domain, zinc finger 17 70 IPR003851 GO:0003677|GO:0006355
Seca8g05061 290 ProSiteProfiles Zinc finger Dof-type profile. 16 70 IPR003851 GO:0003677|GO:0006355
Seca8g05061 290 MobiDBLite consensus disorder prediction 89 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05061 Seca-Chr8 140255736 140256608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05061 3 285 C2C2-Dof Transcription Factor Family AT3G52440 40.468 1.58e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca8g05061 zf-Dof 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05061 - - gmx:100794208 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05061 8 140255736 140256608 Seca8g05061 8 140255736 140256608 ECH
Seca8g05061 8 140255736 140256608 Seca8g05061 8 140255736 140256608 PCT