Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04139 ATGGCGGATCAATGCTCTAATGAAGGCTCCAGCAGTAGCAATATTTCTGCAGAGTGTTCAGATTCAACCGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCCATTTCATCATTCAAAGAGAAAATTGCAAATGAAATCGGTGTTCCAGTTAGTCAGCAACGACTGATTTTCAGAGGAAAAGTCTTAAAGGATGAACATGTTCTTTCTGAGTACCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAACCAAATCAGTCACAGTCTTCTGGCGCGAGATCTGGCGAGCCAACTGGAACAAATAATAACCGAGGAAATGATGTAGGCTCAGGGGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACTTTTAATGTGGGGGAACAAGGTGAAGGCATTGTTCAAGACCTCACCCGGGTTATTGGGGCAGTTTTGAATTCTATTGCAAATGGTGGCCAGAACACAATTAGTGTTCCTAATGCTACACAAACTTCAGCTCCACCAGGGAATGAAACTGAAGGAGTGCATGCTGGAAATCAGGTACCATCTGGACAGACATTTCCTGGTCAGGCATTCCAATCTCTGCCTCAAGTTGCTCAGATTCCTATTGCTGCAGGAGCAATACCCATTCCTTCTATCAATGCACCAATTCCTCATTCATTGAACACGCTGTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACACAATGGTTATTTGCCAAATCTGTCTTCAACTGACCCTGGAGATCGACGAGTGGAATTGCCTTCCAATACACAGGGGTTGCCGACAATTGAAGCATTAAGCACTGTATTGCATTGTGCAGAACAGTTGCTTGGTGGTCAAGCTGTTGCTGCGCTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACTTCTGCTGATCCTAGTGTAAGGGGTCAAATACAGTCAGAATCAGTGCAGATAGGACTTGCTATGCAGCATTTAGGTGCACTTCTACTTGAACTTGGCCGAACAATGCTGACACTGCGTATGGGACAGTCTACTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCAATCAGGGCCAAATCCTATAATGGTGCAGCCCTTCCCACTTCAGACAAGCTCCCTCTTTGGCGGTCCTGTTCCTTCTCCAACTCCTGCACCTTTAGGTGCCATTGGTATTGGAAGTGCTCCTAGGAACGTAAACATTCACATACATGCTGGTACCTCTCTCACACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGAACAAGAAGTGAAAACCGTAATGAGCCTGGCTTAGGTGATTCAGGTTCAACACGAGTATTACCTGTTAGAAATGTCATATCAGCAACTCTCCCATCGAACCCTCCTGGTGTTGGAGTTGCTAGTAGCACACAAACTGGATTTGGTACTTCTACTTCGCAGCCACCACCGGATTCAGTTCCAATTTCATCTATTGTAGCTGAAATCATTTCTCGCCTTAGAAACCCCATTGGTAATATGCAAGGAGAGAACACAGTTCTGTCAGGTGGATTTGGTACTTCTACTTTGCAGCCACCACAGGATTCAGCTCCATTTTCATCTATTGTAGCTGAAATCAATCCTTGCCTTAGAAACTCTATTGGTAATATGCAAGGAGATAACACAGTTCTGTCAGGCCAAATGGAATCAACTAGCAGGGGATTGTCTTCTGGATCTGAATCAAGACCTGCACTGGGAAATGAACAGCAGGATGCTGGGGCTGCCGCTCCATCTTCAATTGGTTGCACTTCTGAAAGTGGAGTAGAGAAGCCCCACACCGAGGCAATCCAAACCTGTAGCAATGACGAGAGAGATGTTTTGGTTGACAAATTTGTTTCAAGTTCTTCCAATCAAGATTTACAAAGTTGTTCCAGTGGAGAAACAACAGTAAAATCAGAAAAAGTACAGGATGCTCCATCTGTGAGTGAAAGACGAGATGTAACTGAGCCTGCCAAAGCTGCTCCACTAGGTTTGGGTATGAGTGGTTTGGAGCGTAAGAGGCGAACTAGACTTCAACCTCCTGTAAGTAAAAGTGCTGATGATGGATCATCCAGTTCTTCCATCAATCAAAGTCAGCAAACCAGAACAGATGGTCAACATATATTACAAACTCTCGCGAATCATGGATCTGCTGTGAATTTGAGAAATGCTAATAGGCCATCCCAGCGGCCCTTGCCCTCCAGTGATAGCCAGATTGATGTGGGTGGTTTAATGTCTCAGGTTTTACATAGCCCCGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTGAGGAACATGTTGCAACAATTCACTCAGAGCCCACAGATGATGAATACGGTCAATCAGATTGTCCAACAGGTTGGCGGTCAGGATATGGGGAGTATGTTTACCGGAATGGAAGGAGGGCAGGGTGGTGGTATTGATTTTTCAAGGATGTTTCAACAGATGATGCCTATTGTATCTCAAGCCCTTGGTGGGGGAAATCCTCCCTCACTATTCCCTGCTGTAGGACCAGAAGCCCGTGCACGCAGAGATGGAACAATTACCAGAGATGAAAATTCTAATAATCAAAGTTTACAGCTTGACCTTCATCCAGTGGCAGAGAGGATTGATCGCCTTAGTCCACCAACAGATGTTTTCCGTGCTGTAGCTGAAAATGCTGTGCAGCTATCTGGCAGTGGAAATGCTTCTAATGATCTTTTGGATGAGTTATGCAGGAATGAGAGTCTCGCCAGTGAATATGTGGAGATGTTGCGATATGATGTAAGTCAGATGCTTGAGGAACACTCTGAGCCGGACAAGTCCTAA 2910 0.4491 MADQCSNEGSSSSNISAECSDSTVQLNIKTLDSRIYSFQVDKNMPISSFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQSSGARSGEPTGTNNNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVQDLTRVIGAVLNSIANGGQNTISVPNATQTSAPPGNETEGVHAGNQVPSGQTFPGQAFQSLPQVAQIPIAAGAIPIPSINAPIPHSLNTLSEFINRMEQTLSHNGYLPNLSSTDPGDRRVELPSNTQGLPTIEALSTVLHCAEQLLGGQAVAALSHIAGRLEREGTSADPSVRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSTAESVVNAGPAVYISQSGPNPIMVQPFPLQTSSLFGGPVPSPTPAPLGAIGIGSAPRNVNIHIHAGTSLTPIVSAIGSRPNNGEGTRSENRNEPGLGDSGSTRVLPVRNVISATLPSNPPGVGVASSTQTGFGTSTSQPPPDSVPISSIVAEIISRLRNPIGNMQGENTVLSGGFGTSTLQPPQDSAPFSSIVAEINPCLRNSIGNMQGDNTVLSGQMESTSRGLSSGSESRPALGNEQQDAGAAAPSSIGCTSESGVEKPHTEAIQTCSNDERDVLVDKFVSSSSNQDLQSCSSGETTVKSEKVQDAPSVSERRDVTEPAKAAPLGLGMSGLERKRRTRLQPPVSKSADDGSSSSSINQSQQTRTDGQHILQTLANHGSAVNLRNANRPSQRPLPSSDSQIDVGGLMSQVLHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQQVGGQDMGSMFTGMEGGQGGGIDFSRMFQQMMPIVSQALGGGNPPSLFPAVGPEARARRDGTITRDENSNNQSLQLDLHPVAERIDRLSPPTDVFRAVAENAVQLSGSGNASNDLLDELCRNESLASEYVEMLRYDVSQMLEEHSEPDKS. 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04139 969 Gene3D - 12 108 - -
Seca8g04139 969 FunFam Large proline-rich protein BAG6 16 109 - -
Seca8g04139 969 SUPERFAMILY Ubiquitin-like 16 98 IPR029071 -
Seca8g04139 969 MobiDBLite consensus disorder prediction 91 128 - -
Seca8g04139 969 MobiDBLite consensus disorder prediction 707 727 - -
Seca8g04139 969 MobiDBLite consensus disorder prediction 174 195 - -
Seca8g04139 969 PRINTS Ubiquitin signature 34 54 IPR019956 -
Seca8g04139 969 PRINTS Ubiquitin signature 76 97 IPR019956 -
Seca8g04139 969 PRINTS Ubiquitin signature 55 75 IPR019956 -
Seca8g04139 969 MobiDBLite consensus disorder prediction 644 727 - -
Seca8g04139 969 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Seca8g04139 969 MobiDBLite consensus disorder prediction 569 626 - -
Seca8g04139 969 MobiDBLite consensus disorder prediction 435 458 - -
Seca8g04139 969 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 968 - -
Seca8g04139 969 MobiDBLite consensus disorder prediction 92 122 - -
Seca8g04139 969 MobiDBLite consensus disorder prediction 435 505 - -
Seca8g04139 969 MobiDBLite consensus disorder prediction 466 505 - -
Seca8g04139 969 CDD Ubl_ubiquitin_like 26 93 - -
Seca8g04139 969 SMART ubq_7 24 95 IPR000626 GO:0005515
Seca8g04139 969 MobiDBLite consensus disorder prediction 644 667 - -
Seca8g04139 969 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Seca8g04139 969 MobiDBLite consensus disorder prediction 569 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04139 Seca-Chr8 118126154 118137105 Dispersed/Wgd