Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04005 ATGGGAGTCCCCGCGTTCTATAGATGGCTGGCGGAGAAATATCCGATGGTGGTTGTGGACGCCGTCGAGGAGGAGCCGGTGGTCATCGAAGGCGTTCAAATCCCCGTCGACACCAGTAAGAAGAACCCTAACGACATCGAATACGATAACCTATACCTCGACATGAACGGCATCATTCACCCCTGCTTCCACCCCGAGGATAGGCCATCTCCGACCTCTTTCGATGAGGTGTTTCAGTGCATGTTCGACTACATTGACAGGCTGTTTGTCATGGTGCGGCCTCGGAAGCTGCTCTATATGGCTATTGATGGTGTTGCACCGAGGGCTAAAATGAACCAACAACGGTCTAGGCGGTTTAGGGCAGCCAAAGATGCAGCTGATGCGGCTTCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAGGGAGGGTAGAAAACTTCCTCCTAAAGAAGGGTCACAGGTTTTCGATTCAAATGTCATTACACCCGGAACGGAATTTATGGCTGTTTTGTCAATTGCACTTCAGTACTATATTCATCTTAGGTTGAACAATGATCCTGGTTGGCGAAATATTAAGGTCATTCTTTCTGATGCAAATGTTCCCGGTGAAGGGGAGCATAAGATTATGTCCTATATTCGCCTGCAGAGAAATCTTAAAGGTTATGATCCAAATACAAGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTCTGGCTACCCATGAAATTCATTTTTCAATTCTTAGAGAGATTGTTTTTACTCCTGGACAAGACAAATGCTTCCTCTGTGGTCAGATGGGTCATGTAGCTGCAGACTGTGAAGGAAAGGCAAAAAGGAAGGCAGGAGAGTTTGATGAAAAGGGAGATGCTATTGTGCCTAAAAAGCCCTACCAGTTCCTAAACATTTGGATTCTGAGGGAATATCTGGAGTATGAGATGAGAATACCAAATCCTCCATTTGAGATTGATTTTGAATGCATTGTGGATGATTTTATCTTCATGTGTTTCTTTGTTGGCAATGATTTCCTACCCCATATGCCTACGCTAGAGATTCGTGAGGGTGCAATTAACTTACTGCTGGCAGTATATAAGAAGGAATTTAAGGCAATGGGTGGTTATTTAACCAATGGAAGTAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAGGCTGTCGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAATCTGACAGAATAAAGCGTCAGAAGGCACAAGCAAGAGGAGATGATGCTCAGCCTCAAGTTCAACCTGAGTCTCTTGTTGCTATTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAACACCTTCACCCTTTCAACAATCTGGGCATTATGATCCTCACATGTCCACATCAGTTAAAGACAACAGATCCTCTGAGAGGCCCCATAAAGTTGCTAGGTTAACTTCAGGAGCAACTGTTGCTGCTGCTATTGTTGAAGCTGAGAGTAGTCTTGAAATAGAAGTTCAAGATAACAAAGATGAATTGAAAACTAAACTGAAGGAGATACTACGTGAGAAATCTGATGTATTCAACTCAAAAAATGCTGAAGAGGACAAGATTAGGTTGGGAGCACCAGGCTGGAAAGAGAGGTATTACGAGGAAAAGTTTTCTGCTAAAACTCCTGAGGAACTTGATAGTATACGGAAAGATGTTGTCTTGAAATACACTGAAGGACTATGCTGGGTGATGCAATATTATTATGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCATCTGATCTCAAGGGTCTTGGTGAGCTTGATATTAGCTTTAACCTAGGTACCCCGTTCAAACCATTTGACCAGCTTCTAGGGGTTTTTCCTGCTGCAAGCGCTCATGCACTTCCTGAGCCGTATAGGAAACTTATGACAGATCCCAACTCACCAATTATTGATTTTTATCCATTTGATTTTGAAGTGGACATGAATGGCAAACGCTATGCCTGGCAGGGTATTGCAAAGTTGCCTTTTATTGACGAAGCCCGTCTTCTCGCAGAAGTTCGGAAAATTGAGAACTTGTTAACACCAGAGGAAGCGCGGCGAAATGCTATAATGTTCGACTTGCTTTTTGTGAATTCGTGTCATCCTCTCTCTGCATGCATAAGTACACTTGACAACAAATGTAGAAACATGTCAAACAATGAACGTGCTGAGGTCAAGGAAAAAATCAATCCCAAAGAAAGTGGTGGAATGAATGGGTACTTATCCTTATGTGGTGGAGAACCTTGCCCTCCTATCTTCAGGTCTCCTGTTGCAAGTATGGAAGATATCATGGACAACCATGTCATGTAA 2373 0.4315 MGVPAFYRWLAEKYPMVVVDAVEEEPVVIEGVQIPVDTSKKNPNDIEYDNLYLDMNGIIHPCFHPEDRPSPTSFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAASEEARLREEFEREGRKLPPKEGSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWRNIKVILSDANVPGEGEHKIMSYIRLQRNLKGYDPNTRHCLYGLDADLIMLALATHEIHFSILREIVFTPGQDKCFLCGQMGHVAADCEGKAKRKAGEFDEKGDAIVPKKPYQFLNIWILREYLEYEMRIPNPPFEIDFECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLLAVYKKEFKAMGGYLTNGSKPNLSRVEHFIQAVGSYEDKIFQKRARLHQRQSDRIKRQKAQARGDDAQPQVQPESLVAISRFHGSRLASAPTPSPFQQSGHYDPHMSTSVKDNRSSERPHKVARLTSGATVAAAIVEAESSLEIEVQDNKDELKTKLKEILREKSDVFNSKNAEEDKIRLGAPGWKERYYEEKFSAKTPEELDSIRKDVVLKYTEGLCWVMQYYYEGVCSWQWFYPYHYAPFASDLKGLGELDISFNLGTPFKPFDQLLGVFPAASAHALPEPYRKLMTDPNSPIIDFYPFDFEVDMNGKRYAWQGIAKLPFIDEARLLAEVRKIENLLTPEEARRNAIMFDLLFVNSCHPLSACISTLDNKCRNMSNNERAEVKEKINPKESGGMNGYLSLCGGEPCPPIFRSPVASMEDIMDNHVM. 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04005 790 Gene3D - 145 385 - -
Seca8g04005 790 Gene3D - 1 135 - -
Seca8g04005 790 FunFam 5'-3' exoribonuclease 611 711 - -
Seca8g04005 790 Pfam Zinc knuckle 262 276 IPR001878 GO:0003676|GO:0008270
Seca8g04005 790 PIRSF Exonuclease_Xrn2 1 790 IPR017151 GO:0004534|GO:0005634|GO:0006139
Seca8g04005 790 MobiDBLite consensus disorder prediction 452 468 - -
Seca8g04005 790 CDD PIN_XRN1-2-like 51 312 - -
Seca8g04005 790 MobiDBLite consensus disorder prediction 409 433 - -
Seca8g04005 790 SUPERFAMILY Retrovirus zinc finger-like domains 258 283 IPR036875 GO:0003676|GO:0008270
Seca8g04005 790 PANTHER 5'->3' EXORIBONUCLEASE 1 788 IPR027073 -
Seca8g04005 790 Coils Coil 505 525 - -
Seca8g04005 790 MobiDBLite consensus disorder prediction 409 425 - -
Seca8g04005 790 Gene3D - 614 711 - -
Seca8g04005 790 MobiDBLite consensus disorder prediction 449 485 - -
Seca8g04005 790 MobiDBLite consensus disorder prediction 469 483 - -
Seca8g04005 790 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Seca8g04005 790 FunFam 5'-3' exoribonuclease 149 372 - -
Seca8g04005 790 ProSiteProfiles Zinc finger CCHC-type profile. 262 276 IPR001878 GO:0003676|GO:0008270
Seca8g04005 790 Pfam Xrn1 helical domain 325 790 IPR041412 -
Seca8g04005 790 SMART c2hcfinal6 262 278 IPR001878 GO:0003676|GO:0008270
Seca8g04005 790 FunFam 5'-3' exoribonuclease 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04005 Seca-Chr8 114963653 114975116 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04005 8 114963653 114975116 Seca8g04005 8 114963653 114975116 ECH