Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03929 ATGAAATTACTGGCCTATGCTAATTCTAGGCAATTACGCAACTTGGAAAAAAATTTTGGTGGAGATGTGAGAGTTTGTGATCGAACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACACATGAAGCGTCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAAGCAGGAGGAAAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAACGTATTTTGCGTAACCAAATTGGTATTCTTAAGAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTACCGTAACAGGCGTTTCTCAGTACCTGTGCCAGTGGTATCCTTGGTTGGTTACACAAATGCTGGTAAGAGTACACTTTTGAATCAATTGACTGGAGCAGATGTTCTTGCTGAGGATAAATTATTTGCAACTTTAGATCCAACTACCAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACGGACACTGTTGGTTTTATTCAGAAGTTACCCACTACACTAGTTGCTGCCTTCAGAGCTACGCTGGAGGAAATATCAGAGTCATCACTTTTGGTGCATGTGGTTGATATCAGTCACCCCCTGGCTGAGCAACAAATAAATGCTGTCGACAAAGTTCTGTCAGAACTAGATGTGTCATCAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAATGTTAGTGATCCCCATGAAATCAGGCTAGAAGCTGAAAAAAGAGAAGATGTTGTGTGCATATCTGCTTTAAGTGGCGAAGGCTTAACAGAATTCTGCAATGCAGTTCAAGACAAACTAAAGGACTCCATGGTATGGGTGGAAGCTTTGTTACCATTTGAAAATGGGGACCTTCTAAGCACCATACACCAGGTTGGAATGGTTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAGGCTCACGTGCCCCTACGTTTTGCAAGATTGCTTACACCCATGAGGCAACTGTGTGTATCACGACCTTAA 1044 0.4167 MKLLAYANSRQLRNLEKNFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRNQIGILKKELESVRKHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLAEQQINAVDKVLSELDVSSIPRLMVWNKVDNVSDPHEIRLEAEKREDVVCISALSGEGLTEFCNAVQDKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQLCVSRP. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03929 347 NCBIfam GTPase HflX 9 283 IPR016496 GO:0005525
Seca8g03929 347 Gene3D - 40 107 - -
Seca8g03929 347 PRINTS GTP1/OBG GTP-binding protein family signature 191 209 IPR006073 GO:0005525
Seca8g03929 347 PRINTS GTP1/OBG GTP-binding protein family signature 124 144 IPR006073 GO:0005525
Seca8g03929 347 Gene3D - 121 289 IPR027417 -
Seca8g03929 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 295 IPR027417 -
Seca8g03929 347 Pfam GTP-binding GTPase N-terminal 9 36 IPR025121 -
Seca8g03929 347 NCBIfam small GTP-binding protein domain 123 279 IPR005225 GO:0005525
Seca8g03929 347 FunFam GTPase HflX 121 290 - -
Seca8g03929 347 Pfam HflX C-terminal domain 254 322 IPR045498 -
Seca8g03929 347 Coils Coil 95 115 - -
Seca8g03929 347 PIRSF GTP-binding_hflX 7 343 IPR016496 GO:0005525
Seca8g03929 347 PANTHER GTP-BINDING PROTEIN HFLX 10 331 IPR016496 GO:0005525
Seca8g03929 347 Pfam GTP-binding GTPase Middle Region 39 116 IPR032305 -
Seca8g03929 347 Gene3D - 5 39 IPR042108 -
Seca8g03929 347 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 122 288 IPR030394 GO:0005525
Seca8g03929 347 Hamap GTPase HflX [hflX]. 1 313 IPR016496 GO:0005525
Seca8g03929 347 CDD HflX 81 284 IPR030394 GO:0005525
Seca8g03929 347 Pfam 50S ribosome-binding GTPase 124 242 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03929 Seca-Chr8 112996577 113001547 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03929 8 112996577 113001547 Seca8g03929 8 112996577 113001547 ECH