Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03868 ATGCCATTCAAGAGTATTGTTCGTGAGCTCAAGGAAATGGGAGAGGGTATTGGCAACATTTATAGAAGAGGGGCAGATTCCAAGCATGTGCATCGCCATGGAAAATCTCATATTGCACCAGAATGTTCCTTACCAGCATCTTCATCTTCATCATCATCATCAACAACAACATCACAGAGCCGGTGGGCTAACTTACCCCCTGAGTTGCTATTGGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCACGCAGAGCGCTTGTAGCATGTGCCTCAGTTTGTAAGTTGTGGAGAGAGATAACAAAGGATGTGGTCAAGACACCAGAACAGTGTGGTTGGCTCACTTTCCCTATATCACTGAAACAGCCTGGTCCAAGAGACAATCCAATCCAGTGTTTCATTAAGAGAGAAAGGGTGACTTCAACATTTCGTTTATATCTTGGTCTGAGCCCTGCTCTATCTGGTGATATGAGCAAACTGCTTTTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTTTAATATCATTAGTTGCTGATGATTTCTCTCGAGCTAGCAATACTTACATTGGAAAACTGAGGTCTAATTTTCTGGGAACCAAGTTTATGATCTTGGATGGTCAGCCACCTCATGATTCTTCACTTCCATTGAATTGCAAGATGCAGCAAAGAGTCCATCTGAAGCAGGTACTTCCAAGGGTTGCTGCTGCTAACTATAAAGTGGCCACAGTATCTTATGAACTCAATGTTCTCCGTACAAGAGGTCCAAGGAGAATGCGGTGTACAATGCACTTAATCCCCATATCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTTGAACTTTACCAATTGCCTTAATGAGCATGCACCAGACACGCCCATTTCAAAAGGAAAGAAGCCAGAAGTTGAGTTTGGCTCAACTGGACCTAGCAATACTCCAGAATCAACCCAGAGTGCAAGAGAACCACTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGACGAGTTACAGTGGCTTCTGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCAAAATGTTTCAGCAGCAGAACAAGAGAAAGTGATACTACAATTTGGGAAAATTGGGAAGGACATATTCACCATGGATTACCGATATCCCCTTTCTGCTTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1269 0.4374 MPFKSIVRELKEMGEGIGNIYRRGADSKHVHRHGKSHIAPECSLPASSSSSSSSTTTSQSRWANLPPELLLDIIQRVEASETSWPARRALVACASVCKLWREITKDVVKTPEQCGWLTFPISLKQPGPRDNPIQCFIKRERVTSTFRLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSRASNTYIGKLRSNFLGTKFMILDGQPPHDSSLPLNCKMQQRVHLKQVLPRVAAANYKVATVSYELNVLRTRGPRRMRCTMHLIPISAIQEGGTAPTPLNFTNCLNEHAPDTPISKGKKPEVEFGSTGPSNTPESTQSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03868 422 CDD F-box_AtTLP-like 62 106 - -
Seca8g03868 422 PANTHER TUBBY-RELATED 36 420 - -
Seca8g03868 422 MobiDBLite consensus disorder prediction 293 326 - -
Seca8g03868 422 Gene3D - 55 108 - -
Seca8g03868 422 MobiDBLite consensus disorder prediction 312 326 - -
Seca8g03868 422 MobiDBLite consensus disorder prediction 42 61 - -
Seca8g03868 422 Pfam Tub family 123 417 IPR000007 -
Seca8g03868 422 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Seca8g03868 422 MobiDBLite consensus disorder prediction 29 61 - -
Seca8g03868 422 ProSitePatterns Tub family signature 2. 407 422 IPR018066 -
Seca8g03868 422 Gene3D Tubby Protein; Chain A 120 422 IPR025659 -
Seca8g03868 422 SUPERFAMILY F-box domain 51 106 IPR036047 GO:0005515
Seca8g03868 422 PRINTS Tubby superfamily signature 178 194 IPR000007 -
Seca8g03868 422 PRINTS Tubby superfamily signature 194 218 IPR000007 -
Seca8g03868 422 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Seca8g03868 422 PRINTS Tubby superfamily signature 400 422 IPR000007 -
Seca8g03868 422 PRINTS Tubby superfamily signature 379 398 IPR000007 -
Seca8g03868 422 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Seca8g03868 422 PRINTS Tubby superfamily signature 243 270 IPR000007 -
Seca8g03868 422 SUPERFAMILY Tubby C-terminal domain-like 111 422 IPR025659 -
Seca8g03868 422 Pfam F-box domain 62 109 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03868 Seca-Chr8 110274243 110277366 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Seca8g03868 Tub 4.1e-105 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03868 8 110274243 110277366 Seca8g03868 8 110274243 110277366 ECH