Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03866 ATGAGTTGGAGAACTTTGCTTTCCCGTTGCACTTCCAGACACACTATCAACAAACTAAATGCAATCTCACAATCCCCTTTCGTCACAAAAACACTCGCCACCGTTTCTTCTTCTCATGCCTCTCATTCTTTCTTCCAGCCACTTCCCCTTTCTCCACTCGCCAGGCACCTTCATTCCGCTCAACTCAGCAACTCGCTCGTTGACCCGGAACTCCGTTCTCAGCTAAACGACGACGACGACGACGGAACGACGAACGAGTTCCTGTCCCGATTCGTGTGGATAATGCGGAAGAAAGTAAAGGAAGCTTACCCTGAAACCGACAAACAAACCATTGATGGCATGCTTCTCGTGATCGTTGACAGGGTTGTCACTGAAATGGAAAACGGTGGTCTCGATTCGGCAGTGTCATCGTCGTCGTCTACTTCGGGGGGTTTCAGTGAGGACTTGTGGAGGACGGTGTGGGAGGTGAGCAACAAGGTGCTGGAAGACATGAACAAGGAGAGGAAGAAGGAGAAAATGAAGGGCTTCTTGCAGTGTGAAGAAGTGAAAGAGATGTGTAGATTTGCCGGCGAGGTTGGCATTCGTGGGGATTTGCTCAGAGAGCTTAGGTTCAAGTGGGCACGTGAGAAAATGGAGGAACACGAGTTCTATGAGGGTTTGGAGCGGCTTAGGAAAGAGGGACAAATTGAAGAAACAGAACATGAGGGAAGAGAGGGAGAGGAAATTGATGTGGTTGAAAGGAAGCCTAAGTCTGTTGCACTTCCCAAGAGGAGAGGGAAGATAAAGTACAAGATTTATGGACTTGATCTCTCTGATCCTAAATGGGAACAGGTTGCTGATAGGATCCATGAGGCTGGACAAGTGCTTTGGCCACAGGAGCCAAAGCCAATAACTGGGAAATGCAAACTTGTTACTGAGAAAATTATGTCATTGAAGGAGGAGGATGAAAACTTGTCAACCCTGTTGGCTGAGTGGGTAGAGCTTCTGGAGCCTAGCAGGGTAGATTGGATCAATTTACTGGACATGTTGAAAAAGCAGAATCTTCCCGTGTACTTCAAGGTGGCAGAAATGGTACTGGCTGAAGATTCTTTCCAAACAAATATATCTGACTACTCTAGGCTTATTGATATCTATGCTAAAGAGAACCACTTTGATGATACTGAGAGGATCCTTAAGAAGATGAAAGAAAATGGTATATTTCCAGATGTTTCAACAGCCAGTGCATTGGTCCACATGTACAGCAAGGGAGGCAATCTTGAACGTGCAAAAGAAGCATTTGAAGTCTTAAGTAGCCAGGGATTCCAACCAGACATAAAGGTCTTCACCTCAATGATCATGGCCTATGTAAATGCTGGCGAACCTAGGATGGCTGAGAATTTGATGACGAAGATGGAAGCAATGGATATTAAGCGCACAAAGGAAATATACTTGGCATTGCTCCAATGTTATTCTCAGCGTGGTGATGTTAGTGGAGCTGGACGGATTTCAACAATTATGCAGTTTGCAGGATTCCAACAGAGTTTGGAGACATGTACCTTGCTTATTGAGGCACATGCACGTGCAGGTGAACCAGATCAGGCAAGAAACAATTTTGACTACATGATAAAATTTGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCAGCTTATGAGAAAAAAAATTTATTGGACAAGGCATTAAATCTTCTTTCGGAGTTAGAGAAGGACGGGTTTGAGCCCGGGGTTGCAACTTATTCTGTTTTTGTAGACTGGTTGGCTAAGATGCAGCTTGTTGATGAGGTTGAACAGCTTTTAAACAAAATTGCTCTACTGGGTGAGGCCCCTCCTTTTAGGGTTCAAGTGAGTCTCTGTGATATGTATGCAAGGGCTGGAATGGAGAAAAAGGCCCTTCAAACTCTGGGCGTTCTAGAAGCTAGGAAGGATGAATTAGGACCAGATGACTTTGACAGAATTATAAAAGGACTTATTGGTGGTGGGTTTCAGCAGGATGCACAAAGGATGTGTGGGGTCATGGAAGCACGGGGTTTCACTGCATCAGAAGAGCTTAAGTCAGCCCTTAGATCTGGCCGCGTACTAAGTATGCGGTAG 2097 0.4545 MSWRTLLSRCTSRHTINKLNAISQSPFVTKTLATVSSSHASHSFFQPLPLSPLARHLHSAQLSNSLVDPELRSQLNDDDDDGTTNEFLSRFVWIMRKKVKEAYPETDKQTIDGMLLVIVDRVVTEMENGGLDSAVSSSSSTSGGFSEDLWRTVWEVSNKVLEDMNKERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLERLRKEGQIEETEHEGREGEEIDVVERKPKSVALPKRRGKIKYKIYGLDLSDPKWEQVADRIHEAGQVLWPQEPKPITGKCKLVTEKIMSLKEEDENLSTLLAEWVELLEPSRVDWINLLDMLKKQNLPVYFKVAEMVLAEDSFQTNISDYSRLIDIYAKENHFDDTERILKKMKENGIFPDVSTASALVHMYSKGGNLERAKEAFEVLSSQGFQPDIKVFTSMIMAYVNAGEPRMAENLMTKMEAMDIKRTKEIYLALLQCYSQRGDVSGAGRISTIMQFAGFQQSLETCTLLIEAHARAGEPDQARNNFDYMIKFGHKPDDRCTASMIAAYEKKNLLDKALNLLSELEKDGFEPGVATYSVFVDWLAKMQLVDEVEQLLNKIALLGEAPPFRVQVSLCDMYARAGMEKKALQTLGVLEARKDELGPDDFDRIIKGLIGGGFQQDAQRMCGVMEARGFTASEELKSALRSGRVLSMR. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03866 698 NCBIfam pentatricopeptide repeat 406 438 IPR002885 -
Seca8g03866 698 NCBIfam pentatricopeptide repeat 371 403 IPR002885 -
Seca8g03866 698 NCBIfam pentatricopeptide repeat 510 542 IPR002885 -
Seca8g03866 698 Pfam Pentatricopeptide repeat domain 361 414 IPR002885 -
Seca8g03866 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Seca8g03866 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Seca8g03866 698 PANTHER OS07G0661900 PROTEIN 94 688 - -
Seca8g03866 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Seca8g03866 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Seca8g03866 698 Pfam Pentacotripeptide-repeat region of PRORP 420 527 IPR033443 -
Seca8g03866 698 Gene3D Tetratricopeptide repeat domain 499 694 IPR011990 GO:0005515
Seca8g03866 698 Gene3D Tetratricopeptide repeat domain 329 498 IPR011990 GO:0005515
Seca8g03866 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Seca8g03866 698 Pfam PPR repeat 548 574 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03866 Seca-Chr8 110186399 110189798 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03866 8 110186399 110189798 Seca8g03866 8 110186399 110189798 ECH