Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03798 ATGGGTTGGCTTAGCAGAATTTTTAAAGGCACAGACCATAAGGTTTCAGAAGGGCATTACTATAAAGAGGAAGCAGATTATTATTTGCCATCAACTTCAGGGGATGTTTGGACCCAGAACGAGAATGAAGATATTGATCGTGCTATTGCACTGTCTCTGGTAGAAGAAAATCAGAAAGTGAACAATGTAAATGACTACAGATCACAATTAGAAGAAGATGAACTACTTGCCAGAGCTATAGAAGAAAGCCTAAACTTGGAGTCTCCTCCCAGATATGGAAATGATAATAATATGTATCAACCAATTCAGTATTTCCCGATGGGGTACAGGATTTGTGCTGGCTGCAATACTGAGATTGGCTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAGTGTGATGTCTGCAGGCACTTTATTCCAACAAACCATGCTGGCCTTATTGAATATCGGGCACATCCATTCTGGATCCAGAAATATTGCCCTTCTCATGAACATGATAATACTCCTCGCTGTTGCAGCTGTGAACGAATGGAGCCACAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGCTTAGAGTGCCTGGATTCTGCCATCATGGATACTAGTGAATGCCAACCCCTTTATGCTGATATACAAAAGTTTTATGAAAGCCTAAATATGAGACTGGATCAGCAAATTCCACTACTGTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGAGAGAAGAATGGTCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTGATCAGATTTCAAGACGACCTAGACATGGGACAGGAAATAGAGCACTAGACACAAGAACACAGCCATACAAACTGACTTCACGCTGTGATGTGACAGCAATTCTCATTTTATATGGTCTTCCAAGATTGCTTACTGGATCAATTCTAGCTCATGAGATGATGCATGCATGGCTGCGGCTGAAAGGTTTTCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGCCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTTCTTCTGCGTCAGGCAGCAACTTTGTATCAACCTCATCCTCATCTGCATCATATGCAGCGAGAAAAGGTAAAAGACCTGATTTTGAGAGGAAGCTTGGAGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGATTTAGGGCAGGTTATAGAGCAGTGCGTAAATATGGGCTACAAAGGACCCTTCATCATATCAGGATGACGGGGAGTTTTCCATATGAATTATAG 1431 0.4263 MGWLSRIFKGTDHKVSEGHYYKEEADYYLPSTSGDVWTQNENEDIDRAIALSLVEENQKVNNVNDYRSQLEEDELLARAIEESLNLESPPRYGNDNNMYQPIQYFPMGYRICAGCNTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCRHFIPTNHAGLIEYRAHPFWIQKYCPSHEHDNTPRCCSCERMEPQEAGYIALKDGRKLCLECLDSAIMDTSECQPLYADIQKFYESLNMRLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTDQISRRPRHGTGNRALDTRTQPYKLTSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSTSSSSASYAARKGKRPDFERKLGEFFKHQIESDISPVYGDGFRAGYRAVRKYGLQRTLHHIRMTGSFPYEL. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03798 476 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 137 - -
Seca8g03798 476 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Seca8g03798 476 SMART lim_4 111 163 IPR001781 -
Seca8g03798 476 Coils Coil 53 73 - -
Seca8g03798 476 Gene3D Cysteine Rich Protein 108 168 - -
Seca8g03798 476 PANTHER PROTEIN DA1-RELATED 2 3 474 IPR045218 -
Seca8g03798 476 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 193 - -
Seca8g03798 476 ProSitePatterns LIM zinc-binding domain signature. 112 146 IPR001781 -
Seca8g03798 476 Pfam Protein DA1 262 469 IPR022087 -
Seca8g03798 476 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Seca8g03798 476 SMART uim 71 90 IPR003903 -
Seca8g03798 476 SMART uim 40 59 IPR003903 -
Seca8g03798 476 CDD LIM_DA1 112 164 - -
Seca8g03798 476 Pfam LIM domain 112 166 IPR001781 -
Seca8g03798 476 FunFam Protein DA1-related 1 106 165 - -
Seca8g03798 476 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03798 Seca-Chr8 108730097 108736374 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g03798 DA1-like 1.8e-95 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03798 8 108730097 108736374 Seca8g03798 8 108730097 108736374 ECH