Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03772 ATGCAGAATATCCCATATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAACTTGAAGGGAGAACACTGGACTGTTAATTCTGTGCCTACAACTAGAGTGCATACAAGTCACACTCTCTGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAACATAAAGGTTGGAGATATCTGCATTTTTGAACTTATACATGAGTGTGAATTACGCGTTCACATTGCTGGGGTTGGCAAAGATGGGATAGACTGCCAGGATGAAAAACTAGCTTTTAGTATGCCTAATGCAGGACATGCTGCCACATGCCATAAGACTTCCAGATATATGCCAATGAATCCTAAAGTCAGCTCAAAATGCATAAGCAAAGTTGATCTTTCAGATAAGAAGTGGACAAAGGTTGGTCAAGAAGCTGTTTTATCAGTTGATTTAAAGAAATCTGGTAGAGCTTCAAATACTTCCAAGAAGATGGGGCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGCTGGCTGTTCAGAGGAAACATCGAGTTGAAGATGAACTAAGCTCACAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCTTTTACTTCACCTTTTCCTAGTTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCTGCGCATCTCCCCACCTACAAAACAGAAGTTATGCTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGATGCAAAAGGCAGAACGATTCACACCTTTTGTGGGGGATGGATGGCGTTTGTCCGTGATAATGACATCAATTTTGGAGACACATGCATTTTTGAACTCGTTGCTCAGTGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAAATGGGCATGTGTGA 972 0.4126 MQNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELIHECELRVHIAGVGKDGIDCQDEKLAFSMPNAGHAATCHKTSRYMPMNPKVSSKCISKVDLSDKKWTKVGQEAVLSVDLKKSGRASNTSKKMGLCPQSKAAHKKLAVQRKHRVEDELSSQAKAGLRMLFALDEQRVAQAFTSPFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVMLRNSRGECWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGLDHQNGHV. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03772 323 SUPERFAMILY DNA-binding pseudobarrel domain 209 310 IPR015300 -
Seca8g03772 323 CDD B3_DNA 214 308 IPR003340 GO:0003677
Seca8g03772 323 CDD B3_DNA 4 79 IPR003340 GO:0003677
Seca8g03772 323 Pfam B3 DNA binding domain 216 303 IPR003340 GO:0003677
Seca8g03772 323 Pfam B3 DNA binding domain 4 79 IPR003340 GO:0003677
Seca8g03772 323 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Seca8g03772 323 Gene3D - 1 82 IPR015300 -
Seca8g03772 323 Gene3D - 201 311 IPR015300 -
Seca8g03772 323 ProSiteProfiles B3 DNA-binding domain profile. 216 312 IPR003340 GO:0003677
Seca8g03772 323 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 85 IPR044837 -
Seca8g03772 323 SMART B3_2 1 85 IPR003340 GO:0003677
Seca8g03772 323 SMART B3_2 216 312 IPR003340 GO:0003677
Seca8g03772 323 SUPERFAMILY DNA-binding pseudobarrel domain 3 81 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03772 Seca-Chr8 107983945 107985799 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g03772 B3 1.4e-13 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03772 8 107983945 107985799 Seca8g03772 8 107983945 107985799 ECH