Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03675 ATGGCTGGCTCTGGTACGCACCACCCAACAACACAACCATCTTCATCTTTTGCCAGAGCCATGCCTCCTGATTCCGAAGAGTTCTCCACCTTGTTCAACCAACTCCTCCACAATAACTCTCCCCCACCACCAATGGATCCGAACCATTCCGAGTCGGACTTCACCTCGACCCACCCGGTTGCTCCTTCTCCTTCTACTTTCAATTTCTCTGATCCTTATGCTGATGCTTCCATCCCTGACCCTCATGCCAGCACATCCTTCAAACAACACACCCTTGAGGATAATGCTGAGACTTCAGAGTTGCCATCAAAGTCTGCCCCACCACCACGTTCTTCGTCAAAAAGGAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAAGCCTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATACTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGCCTTTATCAGGAGGAATGCGACCTATGATGTTGCCTCAGGCTGGGTTGAATCTTGATGAGGGTAATGGATTTCAGAATTCTATCAGTGCAATTGCATCATCTGCAAATGATCATGAAAGTTTGGTGAGGCCTGCTTTTAGTTTTCCAGAGCAATGTAGCATCTCAAATCAATCTCTTGTCATGCCATCAGTGACAAATATAGCTACTTTGGATACCCCATCCAATTTTCAACCCTCTATTAAGGATGCACTCTGCGGCAACATGCCAAAACTGTTTTTGGATACACCAAAGATTGGAAAAACCCCTTCTCCAGATGTTTCTTAA 876 0.4418 MAGSGTHHPTTQPSSSFARAMPPDSEEFSTLFNQLLHNNSPPPPMDPNHSESDFTSTHPVAPSPSTFNFSDPYADASIPDPHASTSFKQHTLEDNAETSELPSKSAPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMPLSGGMRPMMLPQAGLNLDEGNGFQNSISAIASSANDHESLVRPAFSFPEQCSISNQSLVMPSVTNIATLDTPSNFQPSIKDALCGNMPKLFLDTPKIGKTPSPDVS. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03675 291 Gene3D - 112 176 IPR036638 GO:0046983
Seca8g03675 291 FunFam Basic helix-loop-helix transcription factor 112 175 - -
Seca8g03675 291 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 263 IPR031066 -
Seca8g03675 291 CDD bHLH_AtPIF_like 117 179 IPR047265 -
Seca8g03675 291 MobiDBLite consensus disorder prediction 49 72 - -
Seca8g03675 291 MobiDBLite consensus disorder prediction 1 130 - -
Seca8g03675 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Seca8g03675 291 MobiDBLite consensus disorder prediction 115 130 - -
Seca8g03675 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 177 IPR036638 GO:0046983
Seca8g03675 291 MobiDBLite consensus disorder prediction 1 19 - -
Seca8g03675 291 Pfam Helix-loop-helix DNA-binding domain 121 167 IPR011598 GO:0046983
Seca8g03675 291 SMART finulus 123 172 IPR011598 GO:0046983
Seca8g03675 291 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03675 Seca-Chr8 105919572 105922272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03675 117 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 81.707 1.98e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g03675 HLH 3.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03675 8 105919572 105922272 Seca8g03675 8 105919572 105922272 ECH