Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03657 ATGGAGCGAAACATGAATTCCCTGTGCTTCCACAACGCAAATGCAATACACACTCTCCACTCCCACTCTCACTCACACTCCCTCTTCCACCCAACCCCTTCTTTTATTTTCCTCAACACACACTCCTCAAGACCCCACTTTCGATGCTGCTCCATCGAGATCGACATGGTGAAGGACAAGCAAGGCACCTACGCCCCTAAACAAAACAAAGTCGTCGTCCTTTGGGACCTCGACAACAAACCCCCCACTCCCATCGCCTACAACGCCGCTCTCTCCCTCAAAACCCTCGCTCAACACTTCGGCGACGTCGTCGACATCTCCGCCTACGCCAACTGCCACGCCTTCATCCATCTCCCCCAATGGATCCTCGACCAACGCCGAGAACGCAAAAACCTCGACATCCTCGAGCGCAAGGGCGTCGTCACACCTTATGAGCCTTACGTCTGCAACGTCTGTGGCCGCAAATGCAAGACCAACTTCGACCTCAAGAAGCACTTCAATCAGCTTCACCAGCGCGAGCGTCAGAAGAAGCTGAACCGCTTGAACTCCCTTAAGGGGAAGAAGCGACAGCGCTATAAGGAGCGGTTCATTCGTGGGAACCGTAAGTACAATGAGGCTGCTAGGGCTCTTGTTACGCCTAAAGTTGGGTATGGTCTTGCTTCGGAGTTGCGGCGTGCTGGGGTTTTTGTGAAGACCGTGGAGGATAAGCCTCAGGCTGCGGATTGGGCGTTGAAGAGGCAGATGCAGCACTCGATGAGTAGAGGGATTGATTGGTTGTTTCTGGTTTCGGATGATTCGGATTTCTCCGAGATGTTGAGGAGGGCGGGGGAGGCCAATTTGGGGACTGTGGTTGTTGGGGATATGGATAGGGCGTTGGGGCGGCATGTTGATTTGTGGGTTCCTTGGCTTGCGGTTGAGAATGGAGAGATTTCGGAGAAAGATTTGGTGCCGAAGAACAAAGGGAGGAGAACAACAGAGGATTTGGATGGGTTGTTTTTTAGTGAGGATGAGGAATTGGAAGAGGATTTTATGTTAGTGTATAGCGAGGATGAGGATGAGGAATACATTGAAGAAGAAGAAGAAAATGGGTTTTATATTTATTGA 1104 0.5127 MERNMNSLCFHNANAIHTLHSHSHSHSLFHPTPSFIFLNTHSSRPHFRCCSIEIDMVKDKQGTYAPKQNKVVVLWDLDNKPPTPIAYNAALSLKTLAQHFGDVVDISAYANCHAFIHLPQWILDQRRERKNLDILERKGVVTPYEPYVCNVCGRKCKTNFDLKKHFNQLHQRERQKKLNRLNSLKGKKRQRYKERFIRGNRKYNEAARALVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSEMLRRAGEANLGTVVVGDMDRALGRHVDLWVPWLAVENGEISEKDLVPKNKGRRTTEDLDGLFFSEDEELEEDFMLVYSEDEDEEYIEEEEENGFYIY. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03657 367 ProSitePatterns Zinc finger C2H2 type domain signature. 149 170 IPR013087 -
Seca8g03657 367 Gene3D - 63 302 - -
Seca8g03657 367 CDD PIN_LabA-like 157 287 - -
Seca8g03657 367 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 40 347 - -
Seca8g03657 367 Coils Coil 167 187 - -
Seca8g03657 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 175 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03657 Seca-Chr8 105425940 105434917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g03657 5 365 C2H2 Transcription Factor Family AT5G52010 59.416 1.03e-157 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g03657 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03657 8 105425940 105434917 Seca8g03657 8 105425940 105434917 ECH