Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03640 ATGGGCCAGGCAGCTTCCACGGCCTCCGTCGCTAGCCGCCGCGAAAGCGCCCAAGGCCACCGCGCCGCCAACACCTCAAAGACCAGATCCACCGCCTTGGTTTCTCCGATGCTCTCTGGTGAAGAAGATGACGACAACCAACGTCGTGGTGAGGCGGTTATCCATGACTACATCTCCGATCTCCCCGACGAGTGTTTGGCTACGGTGTTCCAGTCGCTTAGCTCCGCCGATCGCAACCGCTGTTCGCTTGTTTGCCGGCGGTGGCTCCAGGTCGAGGGACAGAGCCGTCACCGTCTCTCACTCAACGCGCAAGCGGATCTCCTTCCGGTAATTCCTTCTCTCTTTTCTCGATTCGATTCGGTGACAAAACTAGCGCTCAAATGCGACCGTAGATCCGTGAGTATCAGGGACGATGCGCTCGTCCTCATCTCTCAGCGGTGCCCTAACCTCACGCGCCTAAAGCTCCGCGCGTGTCGCGAGCTCACCGACGCCGGAATGGAAGCCTTTGCCAAGAACTGCAAGGGTTTGAAGAAGCTCTCGTGCGGATCTTGCACATTCGGTTCCAAAGGGATGAACGCGGTGCTCGATAATTGTGCCGCACTTGAAGAGCTCTCTGTCAAGCGCCTCCGCGGAATCACTGATGCCGCGGCGGCGGAACCGATTGGGCCTGGCGTAGCGGCGGCGTCACTCAAAACCATTTGTTTGAAGGAACTTTACAATGGACAGTGTTTTGGTTCGTTGATTCTCGGCGCCAAGAATCTGAAGACGTTAAAGCTTTTCCGATGCTCCGGTGATTGGGATAAGCTCTTTCAACTAGTGGCAGATCGAGTAACAAGCATGGTTGAGGTTCACCTCGAGAGGCTCCAGATTAGCGACGTTGGCTTGCAGGCTATTGCCAATTATTCGAGCTTAGAAATTTTGCATCTGGTTAAGACTCCAGAGTGCACGGATTTGGGACTTGTTGCAATTGCAGAGCGATGCAAACTCTTGAGGAAGCTTCACGTTGATGGGTGGAAGGCAAATCGTATTGGTGATGAAGGGTTAATAGCGGTTGCTAAGTACTGCCCTAATCTACAGGAACTAGTTCTTATTGGAGTTAACCCTACTAAAGCCAGTTTGGAAATGTTAGCATCTAATTGCCAGAATCTAGAGCGGTTGGCTTTGTGTGGAAGTGATACGGTTGGTGATCCTGAGATATCTTGCATTGCAGCTAAGTGTGTAGCTTTAAAGAAACTCTGCATTAAGAGTTGCCCTGTTTCTGATCATGGGATGGAAGCACTGGCTAGTGGGTGCCCCAATTTGGTAAAAGTGAAAGTTAAGAAGTGTAAGGGTGTCACCTCTGAGGGTGGGGATTGGTTGAGGCTTACTAGGGGGTCAATTTCTGTTAACTTAGATACAGGCGAAGCAGAACATCCAGATGCAAGTGCCAGTGATGGTGGAGCACAAGACAATGGGATAGAATTTCCTCCGATGCCTGGCCAAACAGCCGCAACTGCATCAGCCAGTATTGCATCAAGTAGTACTGGTCGATCTAGTTCATTCAAGTCAAGGTTAGGACTTTTGTCTGGGAGGAGTTTAGTGGCTAGCACTTGGAGAAAATGGTCAGGTGGTAGCACTAGTGCCCGCCATGGTTAG 1635 0.5156 MGQAASTASVASRRESAQGHRAANTSKTRSTALVSPMLSGEEDDDNQRRGEAVIHDYISDLPDECLATVFQSLSSADRNRCSLVCRRWLQVEGQSRHRLSLNAQADLLPVIPSLFSRFDSVTKLALKCDRRSVSIRDDALVLISQRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCTFGSKGMNAVLDNCAALEELSVKRLRGITDAAAAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDKLFQLVADRVTSMVEVHLERLQISDVGLQAIANYSSLEILHLVKTPECTDLGLVAIAERCKLLRKLHVDGWKANRIGDEGLIAVAKYCPNLQELVLIGVNPTKASLEMLASNCQNLERLALCGSDTVGDPEISCIAAKCVALKKLCIKSCPVSDHGMEALASGCPNLVKVKVKKCKGVTSEGGDWLRLTRGSISVNLDTGEAEHPDASASDGGAQDNGIEFPPMPGQTAATASASIASSSTGRSSSFKSRLGLLSGRSLVASTWRKWSGGSTSARHG. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03640 544 FunFam F-box protein SKIP2 93 474 - -
Seca8g03640 544 MobiDBLite consensus disorder prediction 1 47 - -
Seca8g03640 544 Gene3D Ribonuclease Inhibitor 222 479 IPR032675 -
Seca8g03640 544 SMART fbox_2 61 101 IPR001810 GO:0005515
Seca8g03640 544 Gene3D Ribonuclease Inhibitor 103 221 IPR032675 -
Seca8g03640 544 ProSiteProfiles F-box domain profile. 55 91 IPR001810 GO:0005515
Seca8g03640 544 FunFam F-box/LRR-repeat protein 3 isoform X1 57 97 - -
Seca8g03640 544 PANTHER UNCHARACTERIZED 59 465 - -
Seca8g03640 544 SUPERFAMILY RNI-like 108 454 - -
Seca8g03640 544 CDD F-box_AtTIR1-like 58 96 - -
Seca8g03640 544 SMART LRR_CC_2 198 224 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 380 405 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 302 326 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 173 197 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 147 172 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 277 301 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 431 458 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 406 430 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 327 354 IPR006553 -
Seca8g03640 544 SMART LRR_CC_2 355 379 IPR006553 -
Seca8g03640 544 MobiDBLite consensus disorder prediction 495 516 - -
Seca8g03640 544 SUPERFAMILY F-box domain 44 91 IPR036047 GO:0005515
Seca8g03640 544 Gene3D - 57 96 - -
Seca8g03640 544 Pfam Leucine Rich repeat 279 299 IPR001611 GO:0005515
Seca8g03640 544 Pfam Leucine Rich repeat 147 170 IPR001611 GO:0005515
Seca8g03640 544 MobiDBLite consensus disorder prediction 465 516 - -
Seca8g03640 544 MobiDBLite consensus disorder prediction 1 35 - -
Seca8g03640 544 Pfam F-box domain 58 90 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03640 Seca-Chr8 104949152 104950786 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g03640 8 104949152 104950786 Seca8g03640 8 104949152 104950786 ECH