LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g03582	ATGAGTGTACAAAGAATTGTGGCCAATCTTATTCCTCGATATGCATGTCATTGTCCAACAGCTTTGGAAGCTGCAGCAAAAGTGGTTATTAATATGCATAACTGGAGTTTGGCATTGATCAACAAGGGAGAGGATTCTGGTGGTATTGCATTTGAAACTGCTAGAGCCTGTATTTTTGGCCTGGCTGATGTTTGCTGCATTGCTTCTTCAGCAGCACCAACATCAGCTGTAATTAGAGGAATTTGCTCAGCAGTTTTTCAAAATGTGCTCACCTTTTTTGTTGCCTTATTTGAGGGAAAGGATGTCCTACAGGTAGTTGAGAAGAATTTCCTGAATATGCAAGATAACCCTGAGGTCTTTTCTAAGTTGAAACAAAAGGTTTTAGATGAAGATGAATCTTCGTTGACCAAATTGTCCAAGTTCCGTACATTATGTCTACTTTGGATATTCTTCTCTTGTCCAAAAGACTTGCTTGCAGCTTGTTTGGAGCTCTTAGGCTCTGCCACAAAAGATGGAACTTCTGCTGAAGGACAGCATTTTCTGAGCCTGGTGACTAGAACATTTGATGATGATGTTCACCTTTCGGATAGAGGAAATGATGGACCTAAATCATGTACAGATTCTACCGGGGCAGACATCAGAGACAACGAGGTTGGCGAGAAAATTATAACCGATGACAACCATGTTTCTAATTGTGATTCATCTGTTAGAAAGAGCTGCTTGCTCATGCTGGTTCTTAACAAGGACCCCTCACTCCAGAAATGGATGTTGTGTAGATGTAAGAAGTTACTTAACTTGCTTAGTAATGCTTCACTGGAAATTACATCGGTACTGCAAGGAATTCTTGGAATGTTTGCTCAGACTGGTCTGGAAGACTGTCAAGTTGATAGTGATGATGATAAATCTGATTCTTCAATTTACATGAATAGGAACTATGTGGTTCCTAGGATCTCTGGGGAACATGAAAGCATTGGTGAAGCATCAGGAAAAGGTAGCAATTTAAGAGTTCATGTTGGTTCTTCTAATGCTGCAGTTTCTCTTGACAATGTTCCTGTATTAAAAGTGGGCGTTGAGATGGGTGAGGAAGGGAATATATCCCATGTTAGAGGTTCAACACCCAGGGATTCGGTAAGCCATCAGATTTTCTCACCTGCAGTTAGAACACCAGTAGACTTTAGGAGTAATTCATTTGAAGGTAGAAATGGTTTCCCAAATGTTGAGAAAAATCAAGTACCAAATATGAATTTCAATTCACCTCTGTTGAGGTCCTCTAGTGGAGCTGTTAGCAATGTTCTGGCTTCTCCTAATAATCATTTTATGTCACCAACTGCCTCAACGAAAAGTCAAATTGTCTGGTGCTGTGATGGGGATCCTGCAGCCATGGATATTGTCTCTGCTTCTAAGCAGCTATGGGTAGGTTATGTAGCGCCTGACATGCCTGAAAACCATATTAGGTTCCAATTAGAGAGGTTTGGTCCTATTGAACAGTTTATTTTCTTCCCAGTGAAAGGATTTGCTTTGGTTGAGTACAGAAGGATCATTGATGCAATAAAAGCTCGACACTATTTACCTGGAAATTTTCCTTGCCGTGTAAAATTCATGGATATAGGACTTGGTACTAGGGGTGCAATGAATGGGGTTGCAGTTGGCTCTAGTTCTCATATATATGTTGGAAATATTTCCAGTCAATGGGCCAAGGATGAGATCCTGCATGAATCAAGGAAAATAATCCACAAGGTTCCTCTTACAGTGATTGATCTTAGCTGTGAGTGTGCATTACTAATGGAGTTTGAAACTCCTGAAGAAGCTGTTTCTATCATGTTGCATCTGAGACAGCTCAGAAGAGAAAGAAGTAATTATAACCCGCATTTTGGTCCAGGAACAGTTAATGTTGGAATTGGGCATGCTTATAAGGATGGTGCAAGACCTTTGCCTGCCCCTCCCCATCTTGACCTTAAAGTCAATAACTCTGCTGGATCACCTCATGCTCGAAATTTACCTGGGAGCCCTGCTGACAGCAGTCGAACGAGGATGTCTCACTTGTGTAACTTACTAGCTTCATTGCGTACAAAATATAATATTAATCAAAACATAGGTCCCCATGATAACTATATGATTGGAAATAGCTATGCTTCTTCCATACGTGAGGAAGATACGGTGCCATCCAGCACTCTGTGGATAACTATTCCTCGCAGTAGCTCTCTGTTCCTCACAGATGACGAGCTAATGGGCATTTGCAACCTTGCTATTTTAAACTCTGGCTCCATTGTGCGGTTGACACAAGCAAACATGCAGATGGGATGTGGTTGGTTTGTTGAATGTAGTAATGTTGATGGTGCAGTTTCTGTCCTAAAGAATCTTCGCAGTTGTCCAGGATTGTTCTTCCAGATAGAATTCAGCAAACAGGGAAATCATAATCAAAATGCTGCACCATTTTCAACTAAACCAGAGAACAATGCTATGGATCTTGTATCCCCCAGAATAAATGCTGAGAATCATAGTAGTGCAGTACATGGTCCACCTCTGTCTCAGTCAAACTGGCATTTTCCTGATTCCAGGGATTTGTCAGAAGTTGGAGCAAGGAAACCTGATGGTTATGATAATTTATCATTGGATCCTCATCAAGGAGGTAATGTTCCACATTTATTCTCAGGAACACATGGACCTTCCATCCCACCACCCCAACAAATTCAGTCATCTCCTTTCATTCGCCCTGTTTATGTTCCTCCAAATGGCCCATGGGATCCACGGGGAATAAATAATCACTTACCTGTCAACCAATTCAAGACAGGAGTAACTCCGAACAATTTTCATGGTAGTGCTGTTATAAGTCCTTTTATACCTGCTTCAGTAACTCCACTTGCTCAGATACAAGGAACTCCAATGCAGGCCTATAACCAGCAGATTCCTCCATCAATTGTACCACCACCTTTATCATCTTTGCCACCTCCTCAGCCTGAAATGCCACCTCCGCTTCCTCCTTCTCCACCACCTCTACCTCAGACACAGCCACCCTTGGTTCCTCCACCACCTGGTTCTCCTCCACCTCCTCCTCCACCCCTTCCTGTCCAAGAACCAGTCAATATGGAATGTTCAGGGCAGTCTCCACAGTATCAGTGGCAGGGGAATCTCTGTAAAAGTGGGGTTAACTACTGTACAATTTATGCATGCAGAGCAGATTCAGATATTTGCAGATATTCAAATGCCATACCTGAGCCTGCCGAGTGGCCTGCAAAGTTAGACATGACTAAACGCACAGATTTTCGGCATGTGAAATCTACATTTGCTGCTACTCCATTTCATAGAAGGGAAGTGTGCCGTTTGATCCCATCTTCCACAAGTGACCACAGAAGGTTTCAGGATTTCATATCATACTTAAAGCAGAGGGATTGTGCCGGAGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTGCTATTCATTCTCCCCCACTCACTTGAAACATGCTCTTTGCTTTCTATCGCACCTGATCCATCAGATTGCCTCATCGCTTTGGTTCTGCCCAAAGAAACAAACTTTGAGTGGATATGA	3558	0.423	MSVQRIVANLIPRYACHCPTALEAAAKVVINMHNWSLALINKGEDSGGIAFETARACIFGLADVCCIASSAAPTSAVIRGICSAVFQNVLTFFVALFEGKDVLQVVEKNFLNMQDNPEVFSKLKQKVLDEDESSLTKLSKFRTLCLLWIFFSCPKDLLAACLELLGSATKDGTSAEGQHFLSLVTRTFDDDVHLSDRGNDGPKSCTDSTGADIRDNEVGEKIITDDNHVSNCDSSVRKSCLLMLVLNKDPSLQKWMLCRCKKLLNLLSNASLEITSVLQGILGMFAQTGLEDCQVDSDDDKSDSSIYMNRNYVVPRISGEHESIGEASGKGSNLRVHVGSSNAAVSLDNVPVLKVGVEMGEEGNISHVRGSTPRDSVSHQIFSPAVRTPVDFRSNSFEGRNGFPNVEKNQVPNMNFNSPLLRSSSGAVSNVLASPNNHFMSPTASTKSQIVWCCDGDPAAMDIVSASKQLWVGYVAPDMPENHIRFQLERFGPIEQFIFFPVKGFALVEYRRIIDAIKARHYLPGNFPCRVKFMDIGLGTRGAMNGVAVGSSSHIYVGNISSQWAKDEILHESRKIIHKVPLTVIDLSCECALLMEFETPEEAVSIMLHLRQLRRERSNYNPHFGPGTVNVGIGHAYKDGARPLPAPPHLDLKVNNSAGSPHARNLPGSPADSSRTRMSHLCNLLASLRTKYNINQNIGPHDNYMIGNSYASSIREEDTVPSSTLWITIPRSSSLFLTDDELMGICNLAILNSGSIVRLTQANMQMGCGWFVECSNVDGAVSVLKNLRSCPGLFFQIEFSKQGNHNQNAAPFSTKPENNAMDLVSPRINAENHSSAVHGPPLSQSNWHFPDSRDLSEVGARKPDGYDNLSLDPHQGGNVPHLFSGTHGPSIPPPQQIQSSPFIRPVYVPPNGPWDPRGINNHLPVNQFKTGVTPNNFHGSAVISPFIPASVTPLAQIQGTPMQAYNQQIPPSIVPPPLSSLPPPQPEMPPPLPPSPPPLPQTQPPLVPPPPGSPPPPPPPLPVQEPVNMECSGQSPQYQWQGNLCKSGVNYCTIYACRADSDICRYSNAIPEPAEWPAKLDMTKRTDFRHVKSTFAATPFHRREVCRLIPSSTSDHRRFQDFISYLKQRDCAGVIKIPASKSIWARLLFILPHSLETCSLLSIAPDPSDCLIALVLPKETNFEWI.	1186

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g03582	1185	Pfam	SPOC domain	1034	1176	IPR012921	-
	Seca8g03582	1185	PANTHER	ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100	2	1136	-	-
	Seca8g03582	1185	MobiDBLite	consensus disorder prediction	832	902	-	-
	Seca8g03582	1185	MobiDBLite	consensus disorder prediction	656	675	-	-
	Seca8g03582	1185	Gene3D	-	459	542	IPR012677	-
	Seca8g03582	1185	SMART	rrm1_1	469	532	IPR000504	GO:0003723
	Seca8g03582	1185	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	468	562	IPR000504	GO:0003723
	Seca8g03582	1185	MobiDBLite	consensus disorder prediction	966	1028	-	-
	Seca8g03582	1185	CDD	SPOC_FPA-like	1039	1177	-	-
	Seca8g03582	1185	MobiDBLite	consensus disorder prediction	970	1025	-	-
	Seca8g03582	1185	SUPERFAMILY	RNA-binding domain, RBD	457	527	IPR035979	GO:0003676
	Seca8g03582	1185	MobiDBLite	consensus disorder prediction	658	675	-	-
	Seca8g03582	1185	MobiDBLite	consensus disorder prediction	832	851	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g03582	Seca-Chr8	102986392	102997833	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca8g03582	8	102986392	102997833	Seca8g03582	8	102986392	102997833	ECH