Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02230 ATGGCTTCCCTTAATTTTCTTCCTCTCTTGGTAACATTATTTGTAACAATTGTTGCTTTTGATGCTTCCTTTCAACCAACTGTCTCAGTTATAAACCCTTTCAATTGTTCTGCCCTCATCAAGGAATGCAATGCCTTACTATACCACATTGACCACAATGATACCATAGAAGAAATTGCTGCTTTATACTCTGTTAATTCCACTCAAATCAAGCCACTAAAGCATGGCAACAAACAAGATTACCTCATAACAGTGCCCTGTTCTTGCAGAAATAGCAGCAACCTTAGCGGATATTTCTATGACACATCATACCAAGTGAAGAAAAATGACAATTTTGCAAATATCTCGACACAGTTTTATAGTGGTCAAGCTTGGCCAATAGAACAGGTGCTTCTTCCGAGTGAAAATTTGACAATAAATCTTGTGTGTGGGTGTGCAGAGGCAGAAAGTGACTCTCATATTATTGTCACATACACGGTCCAACAGAATGATACGCTTGCAGAGATTGCGAATTTGCTATCTTCTGATCCGAGTAGCATCGTGAGCTTGAACAAAATTCTGCAAAAATGTAGCATTTCTAGATGTGGGGTGGGTGCTTTTTGTAAAAATGGAGATGAGTGGAATGTTATCCCATAA 636 0.3868 MASLNFLPLLVTLFVTIVAFDASFQPTVSVINPFNCSALIKECNALLYHIDHNDTIEEIAALYSVNSTQIKPLKHGNKQDYLITVPCSCRNSSNLSGYFYDTSYQVKKNDNFANISTQFYSGQAWPIEQVLLPSENLTINLVCGCAEAESDSHIIVTYTVQQNDTLAEIANLLSSDPSSIVSLNKILQKCSISRCGVGAFCKNGDEWNVIP. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02230 211 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 34 189 IPR044812 GO:0019199|GO:0045087
Seca8g02230 211 SUPERFAMILY LysM domain 156 190 IPR036779 -
Seca8g02230 211 CDD LysM 156 187 IPR018392 -
Seca8g02230 211 Pfam LysM domain 158 186 IPR018392 -
Seca8g02230 211 Gene3D LysM domain 155 194 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02230 Seca-Chr8 49146124 49146759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02230 12 187 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 22.613 2.47e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02230 - - gmx:100791718 203.371