Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g05208 ATGGATAGTAGTAGTAGTGGGTGGAAGGGTAATGTTGAGATATCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAATTCTGCTACTACAATAACTACAGCTTAACTCAACCTCGCTATTTTTGCAAAGGATGCAGAAGGTACTGGACCAAAGGTGGATCTCTCCGCAATGTCCCTGTTGGTGGTGGCTGCAGGAAAAATAGAAGAGGTAATCATAATAAGACCTTAAGACAATCCATTGATGGTCTCACTTTCAAAAATTCACCTTGTGGTGATGCTATAAATCATCATATTCACAACCCCTCAATTGCCCATCCTACTAGGAAGACTAGTAGTACTAATTCCTCCTCCTCTGAGGGACCCAATATTGATCTTGCACTTGTTTATGCAAATTTCCTCAATCATAAGCCAGATTCAGCTGGAACAGGGGTAGTTGAGAATCAAGATCAGATTCAGAATAATGTTTTTGATCCTTCTCTGGAAAATTCTAATACAGAGCAGGTTGGTCCAAGTACTTTGCCTCAAGAACTTGGATTTACTGGGTGTTTGTTGAATCTTCCTGAACAACCTCCTTCCACAGAGTCCAATCTTAGTGAGGGTAATAACCAAATGTACTATAGCGAGTTCAACTCTATGCAGAGCCTTCAAAAAGATAGGATTATTGAGCAATGTAGTAATTTTGAGCTGCCACCTTTGCCAGGTGAAGAGGGAGTCTCACATGATGATGTGATGTGGTCAAATTCTGAGATGATGATAAATCAACATCCATTTCATCAAGTCAGCCAAACGCCAATTGTTGGAGGTGATGATGCTGACTTGTTAATCGGTAATTGGAGCCCCTTTGATTTGCCAAGGGATGCTTCTTTTTCCAGACCTTGA 882 0.4104 MDSSSSGWKGNVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNHNKTLRQSIDGLTFKNSPCGDAINHHIHNPSIAHPTRKTSSTNSSSSEGPNIDLALVYANFLNHKPDSAGTGVVENQDQIQNNVFDPSLENSNTEQVGPSTLPQELGFTGCLLNLPEQPPSTESNLSEGNNQMYYSEFNSMQSLQKDRIIEQCSNFELPPLPGEEGVSHDDVMWSNSEMMINQHPFHQVSQTPIVGGDDADLLIGNWSPFDLPRDASFSRP. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g05208 293 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 189 IPR045174 GO:0003700|GO:0006355
Seca7g05208 293 MobiDBLite consensus disorder prediction 105 121 - -
Seca7g05208 293 ProSitePatterns Zinc finger Dof-type signature. 18 54 IPR003851 GO:0003677|GO:0006355
Seca7g05208 293 ProSiteProfiles Zinc finger Dof-type profile. 16 70 IPR003851 GO:0003677|GO:0006355
Seca7g05208 293 Pfam Dof domain, zinc finger 17 70 IPR003851 GO:0003677|GO:0006355
Seca7g05208 293 MobiDBLite consensus disorder prediction 99 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g05208 Seca-Chr7 149777492 149778373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g05208 3 288 C2C2-Dof Transcription Factor Family AT3G52440 38.387 9.74e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca7g05208 zf-Dof 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g05208 - - gmx:100787193 391.734