Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04879 ATGGAGCAACAAGGAGATGATGGTGGAAGAAGAGGCAGAGAAGGAGGTGAGGTGAATAAGCAACCTCAGCCTCAGCCTCCGCCTCAGAAGTGCCCTCGCTGTGACTCTCTCAACACCAAATTCTGCTATTACAACAACTATAGCTTGACTCAGCCTCGTTACTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGGACCTTGAGGAACGTACCTGTTGGTGGTGGTTGCCGTAAAGGTAAGCGCACCAAAAACTCTCCATCTTCCAGCAGTTCTGCTGAAAATCCTTCCCTGCCACCACAGAATCAGATGGTGGTTCAAACCCAGCCACCGGTGGTGAGGGCTAAAGACCCTTCTTCACTTGTGGCTTCCCCTGTTGTTCCCTTTTATCAAGGTGGTACTGGTGGGTACTTGTCTACTCTGGCAGCGATTCATCAACTGAACCAACCACACCGTTTTGATCAGTCTCTGAATCTTGGGGGTGATGCTCTGCGTTCTTCCAATTTGGGTCTTGTTCCTGCAGGTTTTAATGCTGCTGCTTCTCTTCCTTCAATTCGTCCACCGCAATTCTATCAAGTGGGTAGTGGAGGAAGCAGGGAGGTGCCTTCTCTGTATACCTCAGAACAAGGTTTGATTCCATCCACCATGGCTAATACCAGTGCTGGTGCTGCACCTCACCTTGATTGGTCTCAGAGCTTCATCAATAATAATGTTGCTGGTAATAGGGCCTCTGATGCATCTCTGTGGAGCACTATTAGCACCACTTCCAATATTAGTGGTAACTCTGAGAGGAGTGCTAGTGCTGGTTCTTCTTCTTTGGTCCCAAATCAATGGCCTGATCTGTCAGGGTTTGACCCACCTCAGTGA 870 0.4897 MEQQGDDGGRRGREGGEVNKQPQPQPPPQKCPRCDSLNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRTKNSPSSSSSAENPSLPPQNQMVVQTQPPVVRAKDPSSLVASPVVPFYQGGTGGYLSTLAAIHQLNQPHRFDQSLNLGGDALRSSNLGLVPAGFNAAASLPSIRPPQFYQVGSGGSREVPSLYTSEQGLIPSTMANTSAGAAPHLDWSQSFINNNVAGNRASDASLWSTISTTSNISGNSERSASAGSSSLVPNQWPDLSGFDPPQ. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04879 289 MobiDBLite consensus disorder prediction 83 104 - -
Seca6g04879 289 MobiDBLite consensus disorder prediction 73 104 - -
Seca6g04879 289 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Seca6g04879 289 MobiDBLite consensus disorder prediction 1 17 - -
Seca6g04879 289 MobiDBLite consensus disorder prediction 257 279 - -
Seca6g04879 289 MobiDBLite consensus disorder prediction 1 32 - -
Seca6g04879 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 196 IPR045174 GO:0003700|GO:0006355
Seca6g04879 289 MobiDBLite consensus disorder prediction 257 289 - -
Seca6g04879 289 Pfam Dof domain, zinc finger 29 83 IPR003851 GO:0003677|GO:0006355
Seca6g04879 289 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04879 Seca-Chr6 116194023 116194892 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04879 14 186 C2C2-Dof Transcription Factor Family AT4G21050 44.944 4.24e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca6g04879 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04879 - - gmx:100817065 284.648