Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04876 ATGTTGGGCAACTGTGAGAAAATGGTAGGCATCCCTCCAACGACTATTAACCAATGGTCATCACATTCACAGAGTGATGAGATAGATGAGGTGATGATGAGGATGGAAAAAGCAGGTGATGAAGAGGTTGTTGTTGTTGAGGAGCAGCAGAAGCAGCAAGAAGGGCTAAAGTGTCCTCGTTGTGAGTCATCAAACACAAAGTTCTGTTACTACAACAACTACAGCTTGTCACAGCCAAGACACTTTTGCAAAGCCTGCAAGAGATACTGGACAAGAGGTGGAACTCTCAGGAATGTCCCTGTTGGTGGTGGTTGCAGAAAAAACAAGCGTCTCAAGCGTCCAACATCTACTTCCTCTCCTTCTCCTTCTTCTTCACAGCCCCAGATCGATGCTGCTAATGCTTCAACCTCAAATCACATCACTACTATGTTTTATGGTAACTCTTGTGATGTGAATCTTCCATTCCCAAGGTTCAATTCTAGAAATATCACAAGTTCTTCTGGGTTTGATAATGATCTTCAGCCTCAGTTGAATGCCCTTGGATTAGGTTTTTCGTCATCATCAGGGTTTATGTCCAGTACTACTGAAGCTAATGAAAATGGTTACAGGAATGGGTTTAGTTCAAATGTTTCGAGTTATGATTCTATTTTCGGTTCTTCAAATTCTGCATCCCTGTTGAGCCCTACTCTGCTGCTGCAGCAGCATAAATGGATGAATGGTCCTTCTTTGGAGGGAGTGCAAAGGGCAAGTAATAGCAGTGAGACTGCAGAGATGGTGGCTTTAAAAGACGTGAAAGTAGAATTAGGAGGAGGACAAACATGGAATATGAATGGTGCTTGTCAAAACCAGATGATGATGGACCATGTGGCCTTGTACGATCCTTCACTTTACTGGAATATGGGTGCTGCTTGGAACGATCAACCTAACATTGGTCCATCAGTTACTTCTCTCATCTAG 957 0.4316 MLGNCEKMVGIPPTTINQWSSHSQSDEIDEVMMRMEKAGDEEVVVVEEQQKQQEGLKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPTSTSSPSPSSSQPQIDAANASTSNHITTMFYGNSCDVNLPFPRFNSRNITSSSGFDNDLQPQLNALGLGFSSSSGFMSSTTEANENGYRNGFSSNVSSYDSIFGSSNSASLLSPTLLLQQHKWMNGPSLEGVQRASNSSETAEMVALKDVKVELGGGQTWNMNGACQNQMMMDHVALYDPSLYWNMGAAWNDQPNIGPSVTSLI. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04876 318 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 208 IPR045174 GO:0003700|GO:0006355
Seca6g04876 318 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Seca6g04876 318 MobiDBLite consensus disorder prediction 114 131 - -
Seca6g04876 318 Pfam Dof domain, zinc finger 55 110 IPR003851 GO:0003677|GO:0006355
Seca6g04876 318 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Seca6g04876 318 MobiDBLite consensus disorder prediction 101 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04876 Seca-Chr6 116166171 116167927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04876 56 318 C2C2-Dof Transcription Factor Family AT1G28310 40.984 7.20e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca6g04876 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04876 - - qlo:115990486 287.345