Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04767 ATGGCGGAAGTGCGAAGAGGACAAGAGAGTAGTCAGGGGATTAAGCTGTTTGGCGCAACGATTACATTGCATGGTGGGGAAATAAACGAAGGGAAAAAAGGAAGCAGCGAAGATCAGACGGTGGAGAAGAGATCAGAGAAGATCATAGCGTGCCCAAGATGCAAGAGCATGGAAACCAAATTCTGTTACTTCAACAACTATAACGTGAATCAGCCAAGGCATTTCTGCAAGAGTTGTCAGAGGTACTGGACAGCTGGTGGGGCCCTCCGGAACGTGCCAGTCGGGGCCGGCCGACGGAAGGCCAAGCTGCCGTGTCGTGGAGAAGGTGGATTTCCGGATTGCTTCTATGAAACTAATTCAGATGATGATGAGCAGAGATTTGGGTTGGAGCATGTTGCTACGCCTCAGAGTGATTTCCGGCAGGTTTTTCCGGCCAAACGGCGGAGGACGACCTCAGGTGGTTAG 465 0.514 MAEVRRGQESSQGIKLFGATITLHGGEINEGKKGSSEDQTVEKRSEKIIACPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKLPCRGEGGFPDCFYETNSDDDEQRFGLEHVATPQSDFRQVFPAKRRRTTSGG. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04767 154 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677|GO:0006355
Seca6g04767 154 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Seca6g04767 154 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Seca6g04767 154 PANTHER CYCLIC DOF FACTOR 2 34 102 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04767 Seca-Chr6 115205341 115205805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04767 9 154 C2C2-Dof Transcription Factor Family AT1G29160 51.176 1.48e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca6g04767 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04767 - - gmx:100820604 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04767 6 115205341 115205805 Seca6g04767 6 115205341 115205805 ECH