Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03921 ATGGCCACACAACTAGAATGCTTTCCCCAACCGATTCACACTAACCTCAGCATCTCAAACCTCTCACCAGAGACACCAACAATGGCAAGAAGATCTCTGGTTTGGTCCTTGCTTCTTGTGGTGGCTTGTTTCATTCTAGTTTGTGCTTGTGGGGAGAATTTGCCTCCTAGAACCATTTCTGGTGGCAACTATCATGAATCAATACATAGACTGCAGTCATTTAAGGCCTCTCTAACTAGACATGATTCCATTGCTTCAGAACCATCTTCTTTCTCACCACTATCTTCTAGCCCTTCTCCTTCTCCTCAGCCAATTGAGGGTGTGAGCAATCCAAGGGTATACCTTGTAACATCTTATGGTGCAGACCCAACAGGCAATTCAGATAGCACTGAAGCACTCCTTGCAGCCATAGCAGATGCAGCCAAGGGTCCAAGTGAAGGATATTTGATGGAAGGAATTAATGACCTTGGAGGTGCTCAGATTAACCTTGAGGGTGGAAGTTACAGGATCAGTAGGTCACTAAAGTTGCCGGTAGCTGGGGTGGGGAACCTCATGATACATGGAGGAACCATAAGAGCCTCAGATAATTTTCCAGCAGATGGCTACATCATTGATTTATCAGCCTCTTCTAGTGAGAACAGTGGAGAAAACAAGAAGAGTTCCCCTTCATCATCCTACAATTTTGAGTACATAACTCTCAAGGATCTCTTGTTGGACTCAAACTTCAGGGGAGGAGGCATTTCAGTCATAAACTCACTTAGAACTAACATAGAAAACTGTTACATCACACATTTCACCACCAATGGAATTTTAGTCCAAAGTGGCCATGAAACCTACATCAGGAACTCCTTCCTTGGCCAGCATATAACTGCTGGTGGGGATAAAAATGAAAGGAACTTTTCAGGCACTGGAATAAACCTCCAGGGTAATGATAATGCTGTCACAGATGTTGTAGTTTTCTCTGCTGCTATAGGAATCATGGTTACTGGTCAGGCCAACACTTTTTCTGGTGTACATTGTTACAATAAGGCCACTGGCTTTGGAGGTACTGGGATTTATTTGAAACTACCTGGTTTGACACAAACCAGGATTGTGAATTCTTACATGGATTACACCAGTATTGTTTCAGAAGACCCAGTTCAACTCCATATCTCCAGCAGTTTCTTCCTTGGTGATGCTAATATTGTCCTAAAATCTATAAAAGGGGTTGTAAATGGTGTTAATATTGTTGATAACATGTTCTCAGGCTCAAATAATGGGGTCCAAATTGTTCAGCTGGACCAATCAAATAGTCCTTTCCAACAAATTGATCAAGTTATTGTTGACAGGAACATTGTGAGGGGGATGAATTTAAAGGCCACAGTTGCAAAAATGTCTATGCAAGGGAATGGAACCTCATGGACTGTTGATTTTAGCAATGTTCTTCTTTTTCCTAACCTTATAAAAAATGTTCAGTATTCATTAAGCTCCACAGGAAGCACCTTCCCTAATCATGCTCTGAGGAATGTGTCTGAGAATCGCATTGTGATTGAAACAAATGAAGCAGTAAATGCAAATGTTTTTGTTACGGTGGATCAAAGCATGGTAAGTTGA 1593 0.4168 MATQLECFPQPIHTNLSISNLSPETPTMARRSLVWSLLLVVACFILVCACGENLPPRTISGGNYHESIHRLQSFKASLTRHDSIASEPSSFSPLSSSPSPSPQPIEGVSNPRVYLVTSYGADPTGNSDSTEALLAAIADAAKGPSEGYLMEGINDLGGAQINLEGGSYRISRSLKLPVAGVGNLMIHGGTIRASDNFPADGYIIDLSASSSENSGENKKSSPSSSYNFEYITLKDLLLDSNFRGGGISVINSLRTNIENCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGINLQGNDNAVTDVVVFSAAIGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVSEDPVQLHISSSFFLGDANIVLKSIKGVVNGVNIVDNMFSGSNNGVQIVQLDQSNSPFQQIDQVIVDRNIVRGMNLKATVAKMSMQGNGTSWTVDFSNVLLFPNLIKNVQYSLSSTGSTFPNHALRNVSENRIVIETNEAVNANVFVTVDQSMVS. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03921 530 Pfam Pectate lyase superfamily protein 116 346 IPR024535 -
Seca6g03921 530 MobiDBLite consensus disorder prediction 84 107 - -
Seca6g03921 530 FunFam Polygalacturonase QRT3 116 521 - -
Seca6g03921 530 Gene3D - 116 530 IPR012334 -
Seca6g03921 530 PANTHER POLYGALACTURONASE QRT3 47 528 IPR039279 GO:0004650
Seca6g03921 530 SMART pbh1 181 206 IPR006626 -
Seca6g03921 530 SMART pbh1 309 330 IPR006626 -
Seca6g03921 530 SMART pbh1 252 274 IPR006626 -
Seca6g03921 530 SMART pbh1 404 425 IPR006626 -
Seca6g03921 530 SUPERFAMILY Pectin lyase-like 112 504 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03921 Seca-Chr6 106872569 106875428 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03921 6 106872569 106875428 Seca6g03921 6 106872569 106875428 ECH