Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03919 ATGAGAAATCAAACCCAAAATCTTCATTGTAAAAATTTGTCAGTGCCCAAAACCATGAGATTCTCAACCTTAGCCTTTCTCTTATTATTGGTGGTACAAGAAGCCACTTGCTTCAATGAACATACAGAGTTTTCTCATTTCAGGAGCAAACTTAAACACAGAGAGGCCATTGCTACCACCTTGTCCCAACCACCCTCTGCCTCTTCAGACACAAAAGGGAGTGGCAGAGTGGTGTACCCAATTGGGTATGGTGCAGACCCAACAGGGGCACAAGACAGTAGTGATGCCATTCTGAAAGCTCTTGAAGATGTTTTTGAGATGGAGAGTGGGCTTGAAATGTTGCCAGGTGTTAAAGACCTTGGAGGTGTTGTGATTGATCTGCAAGGTGGAAACTATTCAATCAGCAAACCCATCACATTTCCTTCCTCTGCTATTGCCAATGTTGTGGTACAAGGAGGAACATTGAGAGCTTCTGATACATTTCCTACTGATCGGCATCTTATTGAGTTATCAAACTCCCAAAAGCCCCAAAAAACAACACCATCCAATTCCACTCATGATCATGGCTTCAACAACAACAAACTTCAGCAAACTATAGGAATTTACTATGAAGACATAACATTTAGAGACATCCTCTTTGATTCTAGCTACCGGGGTGGAGGGATCTTCATTGTTGACTCTGCTAGAATCAGGATTAGCAACTGCTTCTTCCTCCATTTCACCACAGAAGGAATTCTAGTCCAACGTGGTCATGAGACCTACATATCAAGCTGTTTCCTTGGACAACACTCAACAGTTGGTGGGGACAAAGGGGAGAGGGAATTCTCTGGCACTGCCATTGATCTTGCTAGCAATGACAATGCAATCACAGATGTTGCAATTTTCTCTGCAGCCATTGGGATTGTTATAAGGGGACAAGCTAACATGATCACAGGGGTGCATTGTTATAATAAGGCAACAGGGTTTGGTGGAATTGGTATTTTGGTGAAATTGGCAGGGAATTCACAAACTAGAATTGACAATTGTTACATGGATTATACAGCTATAGTCATGGAAGATCCTGTTCAAGCTCATGTCACTAATGGATTTTTCTTAGGGGATGCTAATATTGTTTTGAAGTCAATTAAAGGACAAATTTCTGGTTTGAATATAGTTGATAATATGTTCAGTGGGAACCCCAATAGTAAGGTTCCAATTGTAACTCTAGATGGACAATTCAGTGCCATTGATCAGGTGGTGATTGATAGGAACAATGTGAAAGGCATGAGCTTGAGATCAACTGTTGGGATGTTAACTGTGCCTGGAAATGGCACAGAGTGGGTGGCTGATTTTTCAAATATTTTGTTATTCCCTAATAGGATTAGTCATTTTCAGTATTCATTTTACTCACAAGAGGAACCCAAGTTTGTGGCACATTCAGTGACCAATGTGTCAAATAATGTTGTAGTTGTGGAAAGTGAGAAACCAGTCCAAGGGGTTGTTTCCTTCTCTGTTACACAATGA 1503 0.4105 MRNQTQNLHCKNLSVPKTMRFSTLAFLLLLVVQEATCFNEHTEFSHFRSKLKHREAIATTLSQPPSASSDTKGSGRVVYPIGYGADPTGAQDSSDAILKALEDVFEMESGLEMLPGVKDLGGVVIDLQGGNYSISKPITFPSSAIANVVVQGGTLRASDTFPTDRHLIELSNSQKPQKTTPSNSTHDHGFNNNKLQQTIGIYYEDITFRDILFDSSYRGGGIFIVDSARIRISNCFFLHFTTEGILVQRGHETYISSCFLGQHSTVGGDKGEREFSGTAIDLASNDNAITDVAIFSAAIGIVIRGQANMITGVHCYNKATGFGGIGILVKLAGNSQTRIDNCYMDYTAIVMEDPVQAHVTNGFFLGDANIVLKSIKGQISGLNIVDNMFSGNPNSKVPIVTLDGQFSAIDQVVIDRNNVKGMSLRSTVGMLTVPGNGTEWVADFSNILLFPNRISHFQYSFYSQEEPKFVAHSVTNVSNNVVVVESEKPVQGVVSFSVTQ. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03919 500 PANTHER POLYGALACTURONASE QRT3 26 500 IPR039279 GO:0004650
Seca6g03919 500 MobiDBLite consensus disorder prediction 169 191 - -
Seca6g03919 500 Gene3D - 75 440 IPR012334 -
Seca6g03919 500 FunFam Polygalacturonase QRT3 80 495 - -
Seca6g03919 500 SUPERFAMILY Pectin lyase-like 91 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03919 Seca-Chr6 106857867 106861662 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03919 6 106857867 106861662 Seca6g03919 6 106857867 106861662 ECH