Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03906 ATGTTTTTAAAAAATTTCATTTACGACAAACTAATCATGCAATTGCAGTGTAACCGAACGCCTCCAAATAGTGAAAAAGAAAGATCAGTCCATCCTGGGAAAAAATTTCTCCTTCCTTTTCCTTTTGCCCTTTTCCAAATTTCATTTTCTCCACTTTCTTTTTCTTTAAAATCTCAATTTCTCTGTTCGTGCTCTCACCTGATGGCTCCCGGTGTCAGAGACCTTGAGCTCACTTCCCTTGCCGGCGGCCTGAAAATCGCCGGCGATGACTCCGATGACCTCGAGGATGTGCGGCTCCTGGACTCCTACGATAATATTGACGACGGGATGAGGCGAATTCAGGTGAGGGTCTCCGGTATGACCTGCGCCGCTTGCTCCAATTCTGTCGAATCAGCTCTCAAAGCCGTCGACGGCGTTCTCAGCGCCTCCGTCTCCTTGCTACAGAACAAAGCTGACATCATTTTCAACCCGGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCTGAATCCGGTACACTTGGAAAGATTCCACATGGAACTCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTGAATTCCGTTGAAGGTATTTTGAGAAATCTTCCTGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCATTAGGCGAAGTTGAATATGATTCCAGTGTAATTAGTAAAGATGATATAGTCAATGCAATTGAAGATTCTGGTTTCGAAGCTTCATTTGTACAGAGCAGTGAGCAGGATAAAATAGTTTTAGGGGTTGTTGGCGTGTACAGTCTGATTGATGCACAAGTTTTAGAAGGCATGCTTAGCAGCGTGAAAGGAGTAAAGCAGTTTCATTTTGATCAGATATCAGGTGAATTAGATGTCCTGTTTGATCCTGAAGTTCTCAGCTCTAGATCCTTAGTTGATGGGATCCAGGAGGGAAGCAATGGAAAGTTTAAATTACATGTTCGAAGCCCTTATACAAGGATGGCTTCTAAAGATGTCGAAGAGGCCTCAACTATGTTTCGGCTCTTTATCTCCAGCCTGCTTCTTAGTATTCCTCTCTTCTTCATGAAGGTAGTTTGTCCTCATATACCATTAATGTATTCCTTGTTACTTCGGCGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATCCAATTTGTGGTTGGTAAGCGTTTTTACATTGCAGCTGGCAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGATTGCTGTGGGAACTACTGCCTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTCACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCTAAGGGAAAGACATCTGATGCCATAAAAAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAGTTGTCAAAGATAAAGGTGGTAAATCTGTTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAGTTCTTCCTGGTTCAAAGGTTCCTGCTGATGGTATCGTTACTTGGGGTTCAAGTTATGTGAATGAGAGCATGGTAACTGGTGAGTCCATACCTGTTTTGAAGGAGGTGAATGCTTCTGTTATTGGAGGTACAATAAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTAATACAGTTTTGAGTCAGATAATTAGTTTGGTTGAGACAGCCCAGATGTCTAAAGCTCCTATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCAACAGTTGTTTCTTTGGCATTATTGACATTATTGGGTTGGTATATTGCTGGATCTATTGGAGCTTACCCAGAAGAGTGGCTGCCAGAACATGGAAATCACTTTGTTTTTGCCCTGATGTTCTCAATATCTGTGGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTAGTATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCTACTGTTACTACTGCCAAGGTATTCACTGGAATGCAACGTGGGGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTGGCAAAAGCAATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCAGATACTACTGGTACCCAGAATGATATAAAGTCTGGGTGGCTCTCTGATGTCTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTCCAATGCTTTATAGATGGGAAGCGTACTTTGGTTGGTAACAGGAAGTTGATGGCCGAAAGTGGTATAGATATTTCAACAGAAGTGGAAAATTTTGTGATTGAGCTGGAACAAAGTGCAGAGACGGGGATACTGGTAGCATATGATGATATATTAATTGGAGTTTTAGGGGTAGCAGACCCACTAAAGAGAGAAGCTTCTGTAGTTATAGAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCATGCTGTTGCCAAGGAGGTTGGTATTCAAGACGTCAGGGCAGAGGTTATGCCTGCCGGAAAGGCGGACATTGTTCGTTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGATATTGGCATGGCAATTGGGGCTGGAACTGATGTTGCAATAGAAGCTGCCGACTTTGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCCATCTTTCCAGGAAAACCTTCTCTCGCATTCGATTGAATTACGTATTTGCCATGGCTTACAATGTGGTGGCTATACCAGTTGCTGCTGGGGTTTTATATCCTTCACTGGGGATCAAGCTGCCACCGTGGGTTTCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCCTTGCTTCTTAAAAGATATAGAAGACCTAGACTTACTACAGTACTTGAAATAATTGTAGAATAA 3180 0.4292 MFLKNFIYDKLIMQLQCNRTPPNSEKERSVHPGKKFLLPFPFALFQISFSPLSFSLKSQFLCSCSHLMAPGVRDLELTSLAGGLKIAGDDSDDLEDVRLLDSYDNIDDGMRRIQVRVSGMTCAACSNSVESALKAVDGVLSASVSLLQNKADIIFNPALLKDEDIKNAIEDAGFEADILPESGTLGKIPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDSSVISKDDIVNAIEDSGFEASFVQSSEQDKIVLGVVGVYSLIDAQVLEGMLSSVKGVKQFHFDQISGELDVLFDPEVLSSRSLVDGIQEGSNGKFKLHVRSPYTRMASKDVEEASTMFRLFISSLLLSIPLFFMKVVCPHIPLMYSLLLRRCGPFLMGDWLKWALVSLIQFVVGKRFYIAAGRALRNGSTNMDVLIAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSVEEREIDSLLVQPGDTLKVLPGSKVPADGIVTWGSSYVNESMVTGESIPVLKEVNASVIGGTINLHGVLHIQATKVGSNTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPEHGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVVFDKTGTLTQGKATVTTAKVFTGMQRGEFLTLVASAEASSEHPLAKAILAYARHFHFFDDSSDTTGTQNDIKSGWLSDVSDFSALPGRGVQCFIDGKRTLVGNRKLMAESGIDISTEVENFVIELEQSAETGILVAYDDILIGVLGVADPLKREASVVIEGLQKMGVIPVMVTGDNWRTAHAVAKEVGIQDVRAEVMPAGKADIVRSFQKDGSIVAMVGDGINDSPALAAADIGMAIGAGTDVAIEAADFVLMRNNLEDVITAIHLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPRLTTVLEIIVE. 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03906 1059 FunFam Copper-exporting P-type ATPase 727 866 - -
Seca6g03906 1059 SUPERFAMILY Calcium ATPase, transduction domain A 516 602 IPR008250 -
Seca6g03906 1059 FunFam Copper-exporting P-type ATPase A 192 261 - -
Seca6g03906 1059 FunFam Probable copper-transporting ATPase HMA5 837 990 - -
Seca6g03906 1059 PRINTS P-type cation-transporting ATPase superfamily signature 858 869 - -
Seca6g03906 1059 PRINTS P-type cation-transporting ATPase superfamily signature 933 952 - -
Seca6g03906 1059 PRINTS P-type cation-transporting ATPase superfamily signature 880 890 - -
Seca6g03906 1059 PRINTS P-type cation-transporting ATPase superfamily signature 956 968 - -
Seca6g03906 1059 PRINTS P-type cation-transporting ATPase superfamily signature 552 566 - -
Seca6g03906 1059 PRINTS P-type cation-transporting ATPase superfamily signature 716 730 - -
Seca6g03906 1059 NCBIfam copper ion binding protein 196 258 IPR006122 GO:0005507
Seca6g03906 1059 NCBIfam copper ion binding protein 113 176 IPR006122 GO:0005507
Seca6g03906 1059 SUPERFAMILY HMA, heavy metal-associated domain 192 264 IPR036163 GO:0046872
Seca6g03906 1059 SUPERFAMILY HAD-like 715 1039 IPR036412 -
Seca6g03906 1059 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 104 1054 - -
Seca6g03906 1059 ProSiteProfiles Heavy-metal-associated domain profile. 111 177 IPR006121 GO:0046872
Seca6g03906 1059 PRINTS H+-transporting ATPase (proton pump) signature 964 989 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03906 1059 PRINTS H+-transporting ATPase (proton pump) signature 933 949 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03906 1059 PRINTS H+-transporting ATPase (proton pump) signature 905 921 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03906 1059 CDD HMA 114 176 IPR006121 GO:0046872
Seca6g03906 1059 ProSitePatterns Heavy-metal-associated domain. 117 146 IPR017969 GO:0046872
Seca6g03906 1059 SUPERFAMILY Calcium ATPase, transmembrane domain M 450 1008 IPR023298 -
Seca6g03906 1059 CDD P-type_ATPase_Cu-like 357 1029 - -
Seca6g03906 1059 Gene3D - 683 990 IPR023214 -
Seca6g03906 1059 Gene3D - 195 260 - -
Seca6g03906 1059 FunFam Copper-transporting ATPase 1, putative 484 606 - -
Seca6g03906 1059 ProSiteProfiles Heavy-metal-associated domain profile. 193 259 IPR006121 GO:0046872
Seca6g03906 1059 CDD HMA 196 259 IPR006121 GO:0046872
Seca6g03906 1059 SUPERFAMILY HMA, heavy metal-associated domain 107 180 IPR036163 GO:0046872
Seca6g03906 1059 FunFam Copper-exporting P-type ATPase A 109 179 - -
Seca6g03906 1059 SFLD C1.7: P-type atpase like 698 985 - -
Seca6g03906 1059 NCBIfam HAD-IC family P-type ATPase 814 1013 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03906 1059 NCBIfam HAD-IC family P-type ATPase 469 743 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca6g03906 1059 Gene3D - 723 812 IPR023299 GO:0000166
Seca6g03906 1059 Gene3D - 813 864 IPR023299 GO:0000166
Seca6g03906 1059 Pfam Heavy-metal-associated domain 197 257 IPR006121 GO:0046872
Seca6g03906 1059 Pfam Heavy-metal-associated domain 115 175 IPR006121 GO:0046872
Seca6g03906 1059 NCBIfam heavy metal translocating P-type ATPase 430 1042 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca6g03906 1059 ProSitePatterns Heavy-metal-associated domain. 199 228 IPR017969 GO:0046872
Seca6g03906 1059 SFLD p-type atpase 698 985 IPR044492 -
Seca6g03906 1059 Pfam E1-E2 ATPase 499 695 - -
Seca6g03906 1059 Pfam haloacid dehalogenase-like hydrolase 712 947 - -
Seca6g03906 1059 ProSitePatterns E1-E2 ATPases phosphorylation site. 718 724 IPR018303 -
Seca6g03906 1059 Gene3D - 484 606 - -
Seca6g03906 1059 Gene3D - 110 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03906 Seca-Chr6 106761049 106773215 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03906 6 106761049 106773215 Seca6g03906 6 106761049 106773215 ECH