Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03868 ATGGCAGCAAGGATGGCTGCCTCAGCCACTGGCTTGTCTCAGTTGCTTGCATCTAATTTGAAGAGTTTGGCTTCGAATTCTTTTGGCCGGAACTGCTCGTCATTGAGATCTGCAAGTCCTTTCGTTCTCAAAGCATCCGATTTTAATCTTCTTCCCCCTCTTCAGCCACGCAGGTTGCCTTTTAGTACTAGTGCTGCAAACAATGAAGAGGCTGCAGCAAAAGCAGCTGCTTTTAATTTTGATAGTGAAGCTCCAACAATATTTGACAAGATCATAAATAAGGAAATTCCTTCAAGCATTGTTTACGAAGATGAAAAGGTTCTAGCATTTCGAGATATCAATCCACAGGCTCCAGTTCATGTTCTAGTCATTCCGAAATTTAGAGATGGATTAACACAACTTGGGAAGGCTGATGGTAGACATGGGGAGATATTGGGTCAACTTCTCTATGCCGCCAAAATAGTAGCTGAGAAAGAAGGTATCCTTGATGGATTTCGTGTCGTCATCAACAGTGGCCCTAGTGCCTGTAAGCTTGTTTCTTGTCAATCTGTATACCATCTGCACTTGCATGTCCTAGGTGGGAGGCAGATGAATTGGCCACCCGGTTGA 609 0.4401 MAARMAASATGLSQLLASNLKSLASNSFGRNCSSLRSASPFVLKASDFNLLPPLQPRRLPFSTSAANNEEAAAKAAAFNFDSEAPTIFDKIINKEIPSSIVYEDEKVLAFRDINPQAPVHVLVIPKFRDGLTQLGKADGRHGEILGQLLYAAKIVAEKEGILDGFRVVINSGPSACKLVSCQSVYHLHLHVLGGRQMNWPPG. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03868 202 CDD PKCI_related 85 194 - -
Seca6g03868 202 Pfam HIT domain 94 196 IPR011146 GO:0003824
Seca6g03868 202 PRINTS Histidine triad family signature 182 192 IPR001310 -
Seca6g03868 202 PRINTS Histidine triad family signature 108 126 IPR001310 -
Seca6g03868 202 PRINTS Histidine triad family signature 87 103 IPR001310 -
Seca6g03868 202 SUPERFAMILY HIT-like 85 201 IPR036265 -
Seca6g03868 202 ProSiteProfiles HIT domain profile. 87 202 IPR011146 GO:0003824
Seca6g03868 202 ProSitePatterns HIT domain signature. 175 193 IPR019808 -
Seca6g03868 202 FunFam Histidine triad nucleotide-binding protein 1 66 202 - -
Seca6g03868 202 Gene3D - 64 202 IPR036265 -
Seca6g03868 202 PANTHER HISTIDINE TRIAD HIT PROTEIN 63 202 IPR001310 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03868 Seca-Chr6 106231509 106236491 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03868 6 106231509 106236491 Seca6g03868 6 106231509 106236491 ECH