Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02389 ATGGTTCTTTCAAAAACAGCCTCCGAGTCCGACGTCTCCGTCCACTCAACCTTTGCTTCCCGCTATGTCAGGACTTCTCTTCCCAGGTTTAAGATGCCAGAAGAGTCAATACCGAAGGAGGCAGCATACCAGATCATAAACGATGAATTGATGCTGGATGGGAACCCAAGATTGAATCTGGCATCGTTTGTGACAACATGGATGGAGCCAGAGTGTGACAAGCTCATCATGGCTGCCATTAACAAGAACTATGTTGACATGGATGAATACCCAGTCACCACTGAGCTCCAGAATCGGTGTGTTAACATGATAGCTCATCTTTTTAATGCACCACTTCAAGATTCTGAGGCTGCAATTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATCATGTTGGCTGGTTTGGCATTCAAAAGGAAGTGGCAGAACAGAAGGAAGGAAGAAGGAAAGCCTTTTGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGATGTGAAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTGAAACTGCGTGATGGATACTATGTAATGGACCCTGAAAAGGCTGTGGAATTGGTTGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCACTTAAATGATCTCCTCATTGAAAAAAATAAGCAAACTGGATGGGACACTCCTATTCATGTGGATGCAGCCAGTGGTGGCTTCATTGCTCCATTTATTTATCCAGAGCTAGAGTGGGACTTCCGTTTACCACTAGTGAAGAGTATCAATGTTAGTGGTCACAAGTATGGTCTAGTCTATGCTGGAATTGGTTGGGTTATCTGGAGAAGCAAGGAAGATTTACCTGAGGAACTCATCTTTCACATCAACTATCTTGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAATATTACCAACTAATTCGCCTTGGTTATGAGGGATATAGAAATGTGATGGAGAATTGTAGGGACAACATGTTAGTCCTGAAAGAGGGACTTGAGAAAACAGGGCGCTTTGAAATTGTGTCCAAAGACAATGGTGTGCCTTTGGTAGCCTTCACATTGAAGGACCACACACACTTTGATGAATTCCAAATCTCTGACTTATTGAGGCGCTTTGGGTGGATAGTGCCAGCATACACCATGCCCCCAGATGCACAACATGTGACAGTGCTACGTGTTGTTATTAGAGAGGACTTCTCAAGGACACTTGCAGAGCGTCTTGTGGCTGATGTGGAGAAAGTGTTGCATGAGCTTGATTCACTTCCAGCAAGGGTGATAAGTAGCACTAGCACCACTGTGACAGTTACTGGGGAAACAACTAACAATGGAAAGGTAGTTAAAAAGAGTGCTCTAGAGACCCAAAGGGAAATCACTGCACTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGATGAATGACAAGATGAATGGTGTTTGCTAG 1527 0.4447 MVLSKTASESDVSVHSTFASRYVRTSLPRFKMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLQDSEAAIGVGTVGSSEAIMLAGLAFKRKWQNRRKEEGKPFDKPNIVTGANVQDVKVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKHLNDLLIEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMLVLKEGLEKTGRFEIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDSLPARVISSTSTTVTVTGETTNNGKVVKKSALETQREITALWKKFVLERKKMNDKMNGVC. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02389 508 FunFam Glutamate decarboxylase 1 65 - -
Seca6g02389 508 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca6g02389 508 NCBIfam glutamate decarboxylase 16 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca6g02389 508 FunFam Glutamate decarboxylase 364 451 - -
Seca6g02389 508 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca6g02389 508 Gene3D - 1 65 - -
Seca6g02389 508 Gene3D - 66 363 IPR015421 GO:0003824
Seca6g02389 508 Gene3D - 364 451 - -
Seca6g02389 508 FunFam Glutamate decarboxylase 66 363 - -
Seca6g02389 508 SUPERFAMILY PLP-dependent transferases 15 447 IPR015424 -
Seca6g02389 508 CDD DOPA_deC_like 59 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02389 Seca-Chr6 86210470 86219779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02389 1 508 Calmodulin-binding Proteins AT5G17330 83.104 0.0 883
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02389 6 86210470 86219779 Seca6g02389 6 86210470 86219779 ECH