Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g00861 ATGTCCTCCACAACACAAGGTGATAGGCAAGAAGAATTAGTAGTAAAGGGATCAAAGTGTGAAGATTGTGGGAACCAAGCTAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGTTGCAAAAACAAAGGCTTTCACTGCCAAACCCATATCAGAAGCACTTGGATTCCTGTGGACAAAAGGCGCCAGAGACTGGAGCAACCTCTACACCACTTTCAGGCTCAGGGTGGTGGAGATGTCCCTAAAAGGCACAAGCAGCAGAATAATCCATATTCAAGTTTAGAAGAGTTCAAATTTCCAGCAGTTGTGAATTCCATGGCAGTATTCAGCTGTGTTCGGGTGCGGTCTATGGATGAGACGGTTAATGAAATTGCTTATCAAACATCAGTCAACATTGGAGGACATGTGTTTAGTGGTCTTCTTTATGATCAAGGCCCTCAACAAGATCAACAAACCTTCAATGCTAAGGGTGAAAGCTCCTCCATAGAGCCTATAAATCATCAGCAGCATAATAATGATCTCAATCTAATTGGTGCAAGTAGTGCAATTACTATGGCTCCTCCTCTATCAACAACTCATGAGCTTCTTTTTCCTCCACCTCATCCTTTAGCTTCCTTCAGGCCCGGTATGCCATATTTTTCACTCCCAAAACCTTAA 657 0.4292 MSSTTQGDRQEELVVKGSKCEDCGNQAKKDCAYSRCRTCCKNKGFHCQTHIRSTWIPVDKRRQRLEQPLHHFQAQGGGDVPKRHKQQNNPYSSLEEFKFPAVVNSMAVFSCVRVRSMDETVNEIAYQTSVNIGGHVFSGLLYDQGPQQDQQTFNAKGESSSIEPINHQQHNNDLNLIGASSAITMAPPLSTTHELLFPPPHPLASFRPGMPYFSLPKP. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g00861 218 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 15 181 IPR007818 GO:0003700|GO:0006355
Seca6g00861 218 Pfam Domain of unknown function (DUF702) 17 147 - -
Seca6g00861 218 NCBIfam LRP1 C-terminal domain 98 146 IPR006511 -
Seca6g00861 218 NCBIfam putative zinc finger domain, LRP1 type 19 61 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g00861 Seca-Chr6 29431715 29433386 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca6g00861 DUF702 2.3e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g00861 6 29431715 29433386 Seca6g00861 6 29431715 29433386 ECH
Seca6g00861 6 29431715 29433386 Seca12g02813 12 50661175 50664320 ECH
Seca4g00156 4 2387953 2388903 Seca6g00861 6 29431715 29433386 ECH
Seca4g00491 4 8008152 8009898 Seca6g00861 6 29431715 29433386 ECH
Seca6g00861 6 29431715 29433386 Seca4g00156 4 2387953 2388903 ECH