Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05123 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGTAGAGGCCTTGATTGGAACCAGACTTTGCTGCAAGCTCAAAACTTGGAGCTCCCAAAGCCTCCCCCTATGAGGAAACAACAGCAACAACAAATTCAGCAATCAGAGCCTCTGAAGTGCCCAAGATGTGATTCTTCTAATACCAAGTTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAGCTTGTAAGAGACACTGGACTAAAGGTGGAACTTTGCGCAATGTTCCTGTTGGTGGTGGCAGAAAGAACAAGCGACTCAAGAAATCAACTACATCACCAACCTCTGCCATCACCACTTCTATTAGTACCTCCACTTCCAATGAGAATATGGATGGTGAGTTGAGTGCCCACATGGCAATTCAAACTCCTCAGCAAAGTGATGATCAGAAAAGCTTACCTTCTTCTCTTTATCAATCTCTGATTTGTCCACCTTCTTTGCTGCCACCACAACAGAATCTGGTGAGTACTAGAGACTCAGAAGGTAAAGACTTTGGTATTGGTAATGGAATCTTCCTCAGTTCAACTATGCCTTTTCCTCAAAACCAAAGCCTCATCTTCCCCTTCTCAACCTCAAACTCCTTTGACACAAACCCAAGTGCAATAGCAGTATCAACCTCTTTGAGATCATCCAATGTCTATAACTATGGTGAAGAGTTTAAAATAATGGAGGATCCAACCATCAACAGTTTAATGCCAAACACTAGCAGCACTAATACACAACCATGGGAGATAGCTGCAACAAGTACTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGATATTGATTCATTGGTCTCAACTGATGTAAATGCTCCTTGGGATGATCCTGATATCAAACCCTGA 891 0.4265 MGLSSKQVSSRGLDWNQTLLQAQNLELPKPPPMRKQQQQQIQQSEPLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKSTTSPTSAITTSISTSTSNENMDGELSAHMAIQTPQQSDDQKSLPSSLYQSLICPPSLLPPQQNLVSTRDSEGKDFGIGNGIFLSSTMPFPQNQSLIFPFSTSNSFDTNPSAIAVSTSLRSSNVYNYGEEFKIMEDPTINSLMPNTSSTNTQPWEIAATSTGMEMSNYWSWEDIDSLVSTDVNAPWDDPDIKP. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05123 296 MobiDBLite consensus disorder prediction 33 48 - -
Seca5g05123 296 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Seca5g05123 296 Pfam Dof domain, zinc finger 46 99 IPR003851 GO:0003677|GO:0006355
Seca5g05123 296 MobiDBLite consensus disorder prediction 26 48 - -
Seca5g05123 296 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Seca5g05123 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 218 IPR045174 GO:0003700|GO:0006355
Seca5g05123 296 MobiDBLite consensus disorder prediction 88 125 - -
Seca5g05123 296 MobiDBLite consensus disorder prediction 104 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05123 Seca-Chr5 108398489 108399406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05123 35 112 C2C2-Dof Transcription Factor Family AT1G51700 65.385 4.11e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca5g05123 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05123 - - gmx:100806358 435.261