Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04970 ATGGCGGAAGTGCGAAGAGGACAAGAGAGTAGTCAGGGGATTAAGCTATTTGGCGCAACAATTACATTGCATGGTGGGGAAGTAAATGACGGGAAAAAAGGAAACGGCGAAGATCAGACGGTGGAGAAGAGATCAGAGAAGATCATAGCGTGCCCAAGATGCAAGAGCATGGAAACCAAATTCTGTTACTTCAACAACTATAACGTGAATCAGCCAAGGCATTTCTGCAAGAGTTGCCAGAGGTACTGGACTGCTGGTGGGGCCCTCCGGAACGTGCCAGTGGGGGCCGGCCGGCGGAAGGCCAAGCCGCCGTGTCGTGGGGAAGGTGGATTCCCGGACGGTTGCTTCTATGAAACTTCAGATGATGATGAGCAGAGATTTGGGTTGGAGCAGGACAAGTGGCATGTTGCTACGCCTCAGAGTGATTTCCGGCAGGTTTTTCCGGCCAAGCGGCGGAGGACGACCTCAGGTGGTTAG 477 0.5325 MAEVRRGQESSQGIKLFGATITLHGGEVNDGKKGNGEDQTVEKRSEKIIACPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPCRGEGGFPDGCFYETSDDDEQRFGLEQDKWHVATPQSDFRQVFPAKRRRTTSGG. 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04970 158 PANTHER CYCLIC DOF FACTOR 2 34 102 IPR045174 GO:0003700|GO:0006355
Seca5g04970 158 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Seca5g04970 158 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Seca5g04970 158 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04970 Seca-Chr5 107008213 107008689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04970 9 158 C2C2-Dof Transcription Factor Family AT1G29160 53.529 1.76e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca5g04970 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04970 - - gmx:100820604 221.476