Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g01696 ATGAGTCTAAGAGGAAGATCGCATACAAGAAAAGAAAAAATGGGTTTGATCAAGAAAATTGATGAGATCAGCACCCTGTGTGGGATTGAAGCATGTGCTGTAATCTACAGTCCTACTGATCCTCAGCCAGAGGTTTGGCCATCCCAACTGGGAGCCCAAATGGTGCTGTCCAAGTTCAGGAACATGCCTGAAATGGAACAGAGCAAAAAGATGCTGAATCAGGAGACATTCTTGAACCAAAGGATCCAGAAAGCTCAGGAGCAGCTGACCAAACAGAAGAATGACAACAGGAGGAAAGAGATGACCAATCTCATGTATCAATGCCTGAATGCTGGTCAGATTGCTGACGATGTTAGCATGAATGACATCAATGATCTCTCATGGTTGATTGATCACAGCATCAAGGAAATTGAAAGGAAGCTTGGTCAAGGTCAAGGTCAAGGTCAAGGTCAAGGTCAAGGCCAAGCACAAGATCAGGTGGTGGCTAAAAATAATGGAGAACAGATGGTGAATGGAGGAGATGATGAGCAGGTGGATTATGTCCCAATGGTGGATACTACTGATATGGATGCCATGCAACAGCAGCTCTGGGCTTTGAACTTCATGAATGAGCTGCCATTTGCAGATGTTAATCTCCAAAATGGCTTTGGGGGACCTAATCCCCAACTCCCTTGA 675 0.4489 MSLRGRSHTRKEKMGLIKKIDEISTLCGIEACAVIYSPTDPQPEVWPSQLGAQMVLSKFRNMPEMEQSKKMLNQETFLNQRIQKAQEQLTKQKNDNRRKEMTNLMYQCLNAGQIADDVSMNDINDLSWLIDHSIKEIERKLGQGQGQGQGQGQGQAQDQVVAKNNGEQMVNGGDDEQVDYVPMVDTTDMDAMQQQLWALNFMNELPFADVNLQNGFGGPNPQLP. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g01696 224 FunFam agamous-like MADS-box protein AGL80 2 85 - -
Seca5g01696 224 Coils Coil 68 102 - -
Seca5g01696 224 Gene3D - 10 108 IPR036879 GO:0003677|GO:0046983
Seca5g01696 224 ProSiteProfiles MADS-box domain profile. 11 39 IPR002100 GO:0003677|GO:0046983
Seca5g01696 224 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Seca5g01696 224 CDD MADS_SRF_like 10 73 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca5g01696 224 SMART madsneu2 1 48 IPR002100 GO:0003677|GO:0046983
Seca5g01696 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 39 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g01696 Seca-Chr5 50760643 50761633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g01696 20 165 Type I MADS-box Gene Family AT5G48670 44.521 6.52e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g01696 SRF-TF 3.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g01696 - - gmx:100813231 208.379